PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024663-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 526aa MW: 57620.4 Da PI: 6.2077

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024663-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	58.9	9.7e-19	234	274	1	40
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkver 40 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+ e NNU_024663-RA 234 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQKEI 274 58*************************99****9775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-25	219	314	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-17	227	277	IPR003657	WRKY domain
PROSITE profile	PS50811	22.504	229	314	IPR003657	WRKY domain
SMART	SM00774	4.2E-28	234	313	IPR003657	WRKY domain
Pfam	PF03106	2.5E-22	235	312	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-5	285	314	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MVMEERAMQI DLSLKLEGQD EGEKDEEKQH EISLDDKQGK LHHEDGIEEA EKREEDQDDA 60 SPENLLQGNN LKIEKLSVLQ MEMDRMKEEN KQLRKVVEQT MKDYYDLQMK LAVIQQNDTK 120 QDPQIFLSLR GGPKTIQASK QVPEIEKNNN NQGTQLTSEA DSGEEDGELG LTLSMGSHVQ 180 QRGRDESTEE RKSMEPINKL PRTTQLPGIT SYPPNPPNRK ARVSVRARCQ APTMNDGCQW 240 RKYGQKVAKG NPCPRAYYRC TVAPGCPVRK QKEIRTHKLS PVPSYHCSDQ VQRCLEDMSI 300 LITTYEGTHN HPLPVGATAM ASTTSTAATF MLLSGVNSGT PVVADGIISD AQTPISYRSP 360 HSISPPPHSS STLSNIINAS DHSKGIVLDL TNNSQQFSFA GSSHSQPQLV YPWMSSNSGH 420 HHHKAGSYGG LSISNELGSL RGVDKGNWKT EEEKSSLAEN VSSIASDPKF RVAVAAAITS 480 FMSKESPMAQ PNGSSLVLGD GEAAGSSSGS KWVAAEFLPA CGKPLQ

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MVMEERAMQI DLSLKLEGQD EGEKDEEKQH EISLDDKQGK LHHEDGIEEA EKREEDQDDA  60
SPENLLQGNN LKIEKLSVLQ MEMDRMKEEN KQLRKVVEQT MKDYYDLQMK LAVIQQNDTK  120
QDPQIFLSLR GGPKTIQASK QVPEIEKNNN NQGTQLTSEA DSGEEDGELG LTLSMGSHVQ  180
QRGRDESTEE RKSMEPINKL PRTTQLPGIT SYPPNPPNRK ARVSVRARCQ APTMNDGCQW  240
RKYGQKVAKG NPCPRAYYRC TVAPGCPVRK QKEIRTHKLS PVPSYHCSDQ VQRCLEDMSI  300
LITTYEGTHN HPLPVGATAM ASTTSTAATF MLLSGVNSGT PVVADGIISD AQTPISYRSP  360
HSISPPPHSS STLSNIINAS DHSKGIVLDL TNNSQQFSFA GSSHSQPQLV YPWMSSNSGH  420
HHHKAGSYGG LSISNELGSL RGVDKGNWKT EEEKSSLAEN VSSIASDPKF RVAVAAAITS  480
FMSKESPMAQ PNGSSLVLGD GEAAGSSSGS KWVAAEFLPA CGKPLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-17	221	316	1	76	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245089.1	0.0	PREDICTED: probable WRKY transcription factor 9
TrEMBL	A0A1U7Z335	0.0	A0A1U7Z335_NELNU; probable WRKY transcription factor 9
STRING	XP_010245088.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	6e-68	WRKY DNA-binding protein 9