PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024662-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 496aa MW: 55026.3 Da PI: 5.3104

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024662-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.1	7.4e-28	234	292	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK k +++pr+YYrC a gCpvkk+v+r+ ed +++++tYeg+Hnh+ NNU_024662-RA 234 YDGCQWRKYGQKIAKRNPCPRAYYRCMVApGCPVKKQVQRCLEDMSILITTYEGTHNHP 292 59***********************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-29	218	294	IPR003657	WRKY domain
SuperFamily	SSF118290	1.2E-25	228	294	IPR003657	WRKY domain
SMART	SM00774	2.0E-33	233	293	IPR003657	WRKY domain
Pfam	PF03106	1.9E-25	235	292	IPR003657	WRKY domain
PROSITE profile	PS50811	26.773	235	294	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MGKEERMTQI DLSLNLGSQN GKELVEEEAE QVVEELEVDD QEGQENPACG SEERKERREE 60 EKDASAGKFL QENLRTEEME MDRMKEENKL LRKVVEETMK DYRSLQMKLA VVQQNDTRKD 120 PQIFLSLHGD ANTIQGTRDV SEVVHDKNPA PLLPSEAKNG EDEDEELELS LSMQTHAHQH 180 GRDDNTKEEN RGLEPEQNNL VKKESDGITN SSPEPPSKKA RITVRARCPA PTIYDGCQWR 240 KYGQKIAKRN PCPRAYYRCM VAPGCPVKKQ VQRCLEDMSI LITTYEGTHN HPLPTGACTM 300 ASMASAAATF VWPSAVNSGS IINDGRTPIP YCNPHSISPS LHSSTTIKNI IDPRNQSNQI 360 VVDLTNNPQQ QFRLPSSSHS RPELAYPWIP TNPSCKTTAG AIVNGGHDFS AHQSPSFQGM 420 DKRDWKVEEK SLSDNVSAIA SDPKFRAAVA AAITSFISTR DSPTVQSKGS SLILRDGEGG 480 GNSSSNKWLL ESLPSC

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MGKEERMTQI DLSLNLGSQN GKELVEEEAE QVVEELEVDD QEGQENPACG SEERKERREE  60
EKDASAGKFL QENLRTEEME MDRMKEENKL LRKVVEETMK DYRSLQMKLA VVQQNDTRKD  120
PQIFLSLHGD ANTIQGTRDV SEVVHDKNPA PLLPSEAKNG EDEDEELELS LSMQTHAHQH  180
GRDDNTKEEN RGLEPEQNNL VKKESDGITN SSPEPPSKKA RITVRARCPA PTIYDGCQWR  240
KYGQKIAKRN PCPRAYYRCM VAPGCPVKKQ VQRCLEDMSI LITTYEGTHN HPLPTGACTM  300
ASMASAAATF VWPSAVNSGS IINDGRTPIP YCNPHSISPS LHSSTTIKNI IDPRNQSNQI  360
VVDLTNNPQQ QFRLPSSSHS RPELAYPWIP TNPSCKTTAG AIVNGGHDFS AHQSPSFQGM  420
DKRDWKVEEK SLSDNVSAIA SDPKFRAAVA AAITSFISTR DSPTVQSKGS SLILRDGEGG  480
GNSSSNKWLL ESLPSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	220	296	1	76	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019051741.1	0.0	PREDICTED: probable WRKY transcription factor 9
TrEMBL	A0A1U8Q191	0.0	A0A1U8Q191_NELNU; probable WRKY transcription factor 9
STRING	XP_010245108.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	3e-55	WRKY DNA-binding protein 9