PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024612-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 371aa    MW: 41254.7 Da    PI: 7.8221
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024612-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.5e-17121166147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
    NNU_024612-RA 121 RGHWRPAEDAKLKELVAQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 166
                      899*****************************.***********996 PP
2Myb_DNA-binding57.53e-18173216146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
    NNU_024612-RA 173 RRAFTEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 216
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.718116167IPR017930Myb domain
SMARTSM007171.2E-14120169IPR001005SANT/Myb domain
PfamPF002493.6E-16121166IPR001005SANT/Myb domain
SuperFamilySSF466892.55E-28121214IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-27122174IPR009057Homeodomain-like
CDDcd001678.95E-14124165No hitNo description
PROSITE profilePS5129427.188168222IPR017930Myb domain
SMARTSM007172.2E-15172220IPR001005SANT/Myb domain
PfamPF002491.1E-14173215IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-20175220IPR009057Homeodomain-like
CDDcd001671.20E-7184215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSLQHLQSTL CQRSDGEGLR AFAGASFLSP PSPLTLPLRI GGSTSEAKST AMAFQVLNDP  60
IELQKKEWGF QPLESRRMNG SEGGCNGYLG NQSTRAEEEE GENFVTGKDH ENGQQPKLCA  120
RGHWRPAEDA KLKELVAQYG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFTEEE  180
EERLLAAHRL YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR RHREQSSVYR RRKPSSSPAA  240
QKKIEMTNQN YACSDSTITS NRDESASTCT DLSLNSSSTR VTTSFFTRIS PHQNQRSFPS  300
EVNVGGSVNG FCNYTPKGMN MSVDQSGYSD SNSEISATES VANNHTGAGE IDYGNENFSL  360
PFIDFLGVGA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-331212217107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245158.10.0PREDICTED: myb-related protein 330-like
RefseqXP_010245159.10.0PREDICTED: myb-related protein 330-like
RefseqXP_010245160.10.0PREDICTED: myb-related protein 330-like
SwissprotQ5NBM85e-81CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A1U7YXA20.0A0A1U7YXA2_NELNU; myb-related protein 330-like
STRINGXP_010245158.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.18e-71myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]