PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024593-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Dof
Protein Properties Length: 336aa    MW: 36745.1 Da    PI: 7.6379
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024593-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.93e-403596263
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                   +e+alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+r+nk+sss
  NNU_024593-RA 35 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRRNKRSSS 96
                   7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-272488IPR003851Zinc finger, Dof-type
PfamPF027011.4E-333793IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6093993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDPSNAQHQA MATHSLEDIL AYPKPQQERK SRPQPEQALK CPRCDSTNTK FCYYNNYSLS  60
QPRYFCKACR RYWTKGGSLR NVPVGGGCRR NKRSSSSKKT QDPSLITTNS NPLPTLPSFT  120
CDSSDLTLAF ARLHKQPTRQ LGLDDHDGSL LGGLNSTNCD VPGNPFSTTT ATTPGGILDA  180
LRNTGFLDTP TGFNNFCYGF GNCNMGEMAS GGGGSEEVAL PYEDMIGAIV PTATTTKQEF  240
CKGRDGENRM LWGFPWQSGA DGSMGVVDSG REYWNGLGSS WHGLVNSPLL PSKEYAEVGE  300
LSVSILKEKA IRVMPHVSAL FEADRGSKHY SSYLEY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244980.10.0PREDICTED: dof zinc finger protein DOF3.2-like
TrEMBLA0A1U7ZB290.0A0A1U7ZB29_NELNU; dof zinc finger protein DOF3.2-like
STRINGXP_010244980.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.12e-34TARGET OF MONOPTEROS 6