PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024330-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 435aa    MW: 49195.8 Da    PI: 6.794
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024330-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.65.2e-36461881128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........s 80 
                    lp+G++F+Ptd+el+ e+L++kv+gk+      ++++  +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++        +
  NNU_024330-RA  46 LPAGVKFDPTDQELI-EHLEAKVAGKDskshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggD 139
                    799************.99********96665443333333666646**********.555666799******************733345555447 PP

            NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  NNU_024330-RA 140 TRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 188
                    78************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-3842207IPR003441NAC domain
PROSITE profilePS5100532.99246207IPR003441NAC domain
PfamPF023652.1E-1647188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MNKTHIGSIS SSDLIDAKLE EHQMCGSKQC PGCGQKLERK PDWLGLPAGV KFDPTDQELI  60
EHLEAKVAGK DSKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQGGDT RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKHRKPEKTN  180
WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRSA TTGEGSNEPL RRDSGSGSCS  240
SRDVSAQRDE LSAAGSVISG YSVMDIEHMK SDHFSFAPFR KSFDEVGMIE ASKAREITAA  300
RTCEEHEEQD HQRLQHDVTH EHQQQHHQVT MAAFHVSRPS HPISTIISPP PLHTSIVLDE  360
DPYNVSTIIL QNEKYQQHQH QHHKLGGRAA SGLEEMLIGC TSTDIKEESS ITSPQEAEWL  420
KYSFWPDPDN PDHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-134418813140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244407.10.0PREDICTED: uncharacterized protein LOC104588253 isoform X1
RefseqXP_010244410.10.0PREDICTED: uncharacterized protein LOC104588253 isoform X1
SwissprotQ9M0F81e-176NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1U7YVD20.0A0A1U7YVD2_NELNU; uncharacterized protein LOC104588253 isoform X1
STRINGXP_010244406.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-141NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]