PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024306-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 335aa    MW: 36870.1 Da    PI: 9.1692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024306-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.6e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++v+++G+g +W + +++ g++R++k+c++rw++yl
    NNU_024306-RA 14 RGPWSPEEDTALKNYVEKYGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding33.97.2e-1169128246
                      SSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  + +  G++                 W+ Ia+ ++ gRt++++k++w++
    NNU_024306-RA  69 GGFTEEEDNIICTLYNSIGSRqvkssllfskkkkknyLWSVIASQLP-GRTDNDVKNYWNT 128
                      569********************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.205966IPR017930Myb domain
SuperFamilySSF466891.59E-2311126IPR009057Homeodomain-like
SMARTSM007172.2E-121364IPR001005SANT/Myb domain
PfamPF002491.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-241569IPR009057Homeodomain-like
CDDcd001671.28E-91662No hitNo description
PROSITE profilePS500908.95563130IPR017877Myb-like domain
SMARTSM007177.8E-1067132IPR001005SANT/Myb domain
PfamPF002493.8E-969128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1970134IPR009057Homeodomain-like
CDDcd001674.35E-771128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDTALKNYVE KYGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIC TLYNSIGSRQ VKSSLLFSKK KKKNYLWSVI ASQLPGRTDN  120
DVKNYWNTKL KKKWLAKKNG LNSNSSITTT VNSNKANNNN MDFSSTPSSS TCLTTKTETF  180
DYDFSTFLNT SSTTVLPFST GGGLGHDVNS NRKIPDPTHL SLPAGLMEPS ELGTSRNNSY  240
SVTSSQDVSG LSASPSVGME NGYGTWSGNG GGDDQYGLFM DFGSSPYHLL NGFGFQEKYN  300
VDEATPYLAN TTYTNLLATV YETKPQGLYQ SVSLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-22141337107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244374.10.0PREDICTED: transcription factor MYB36-like
SwissprotQ9FKL22e-72MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1U7Z9J20.0A0A1U7Z9J2_NELNU; transcription factor MYB36-like
STRINGXP_010244374.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-65myb domain protein 68
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]