PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024298-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 454aa MW: 49831.7 Da PI: 5.736

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024298-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.6	1.9e-07	373	413	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A +Y+k L NNU_024298-RA 373 ARHRRERISERIRVLQRLVPGG-----TKMDTATMLDEAANYLKFL 413 599***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.697	364	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-12	370	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-11	370	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-13	370	423	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.3E-5	374	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.72E-4	386	418	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MDCLGWDEPS IWSNEVQHEL AQGSIASNTT INYGILSGKV DLYEGVFQRT RMSGIGSNSE 60 GVNEMAQQLV PTLDSINVVS DLNLLQRQEA IRLADAALLA KSGTGSAAWG EAPTTAELCS 120 NHVINRPCSI NPLSDLMAEL GAVDRLRVKD GRAGVSDTGS LESFDCLLSA TNSNTDTSME 180 DDDISMILSD CRNLWNFNSG GAVSSGESEN NGSNGSNKDM CWRFNNELDE AVSRGSSNPF 240 VNHGRPSDVG PNSNKRSKVE QQLKVMRPNN HHYFDLLQSD SSTTDGGFRL IPENQPKPKK 300 PRSEKQRSSN INFQQSNSSF SSADELDAEA IAQMKEMIYR AAVFRPVNLG LEVVEKPKRK 360 NVRISSDPQT VAARHRRERI SERIRVLQRL VPGGTKMDTA TMLDEAANYL KFLRSQVKAL 420 ETLGHKADSV NCSSTNLPPN LPFPMQTIFP LPKP

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MDCLGWDEPS IWSNEVQHEL AQGSIASNTT INYGILSGKV DLYEGVFQRT RMSGIGSNSE  60
GVNEMAQQLV PTLDSINVVS DLNLLQRQEA IRLADAALLA KSGTGSAAWG EAPTTAELCS  120
NHVINRPCSI NPLSDLMAEL GAVDRLRVKD GRAGVSDTGS LESFDCLLSA TNSNTDTSME  180
DDDISMILSD CRNLWNFNSG GAVSSGESEN NGSNGSNKDM CWRFNNELDE AVSRGSSNPF  240
VNHGRPSDVG PNSNKRSKVE QQLKVMRPNN HHYFDLLQSD SSTTDGGFRL IPENQPKPKK  300
PRSEKQRSSN INFQQSNSSF SSADELDAEA IAQMKEMIYR AAVFRPVNLG LEVVEKPKRK  360
NVRISSDPQT VAARHRRERI SERIRVLQRL VPGGTKMDTA TMLDEAANYL KFLRSQVKAL  420
ETLGHKADSV NCSSTNLPPN LPFPMQTIFP LPKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010244365.1	0.0	PREDICTED: transcription factor bHLH87
Swissprot	Q8S3D2	4e-85	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1U7YV99	0.0	A0A1U7YV99_NELNU; transcription factor bHLH87
STRING	XP_010244365.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-58	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]