PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024201-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NF-YC

Protein Properties

Length: 284aa MW: 31616.9 Da PI: 4.9087

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024201-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.9	4.5e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki++adedv +i+ +P l+ska elf+ +l r++ + +t+ ++++v++ ++fdfl +iv + NNU_024201-RA 6 DTRFPASRIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLRRGAKTMSALHLKQCVQSFNVFDFLREIVSK 86 5789*************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.3E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.82E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	2.1E-17	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MRKKLDTRFP ASRIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YDITLRRGAK 60 TMSALHLKQC VQSFNVFDFL REIVSKVPDL GGSDAAGEDR TVAKRRKAAD DEDDSDEELK 120 RSRTHETVHG STGGRGRGRG RGRGRGRSSR LIERESAHYE KCEDDPDISP QHNDKQHPNP 180 ERLDNGTEAK ESKEIMAVGS SSSSSTNAVV RNFDLNVNLD DNGDTTAIAT AAPASSSVEP 240 PEMKHEEYPG WSLSDMDKMA IDPLQLAQLN RRLDEDEEDY DEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	145	RGRGRGRGRG
2	136	146	RGRGRGRGRGR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010244432.1	0.0	PREDICTED: dr1-associated corepressor-like
Refseq	XP_010244433.1	0.0	PREDICTED: dr1-associated corepressor-like
Refseq	XP_010244434.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A1U7YVF0	0.0	A0A1U7YVF0_NELNU; dr1-associated corepressor-like
STRING	XP_010244432.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	2e-56	NF-YC family protein