PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_024112-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 179aa MW: 21081.4 Da PI: 10.053 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.4 | 6.8e-54 | 8 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL kkv +++ + +i evd++k+ePwd+p ++k +ekew +fF+ +d+ky+tg r+nrat++g Wkatgkdke+++ NNU_024112-RA 8 LPPGFRFHPTDEELITHYLSKKVVDSSSYA-IAIGEVDLNKCEPWDMPWRAKMGEKEWyfFFFCVKDRKYPTGLRTNRATEAGCWKATGKDKEIYR 102 79**********************999776.78***************88889999**656899******************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lv +kktLvfy+grapkgekt+Wvmheyrle NNU_024112-RA 103 -GKTLVEMKKTLVFYRGRAPKGEKTNWVMHEYRLE 136 .999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-58 | 6 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.463 | 8 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-28 | 9 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 179 aa Download sequence Send to blast |
MEEEHIDLPP GFRFHPTDEE LITHYLSKKV VDSSSYAIAI GEVDLNKCEP WDMPWRAKMG 60 EKEWYFFFFC VKDRKYPTGL RTNRATEAGC WKATGKDKEI YRGKTLVEMK KTLVFYRGRA 120 PKGEKTNWVM HEYRLEGKFS LSNLPKSAKN EWVICKMLNK SLGNPWKKSI HKKKSLPRN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-50 | 3 | 168 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010244507.2 | 1e-126 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 6e-97 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1U7ZB87 | 1e-125 | A0A1U7ZB87_NELNU; NAC domain-containing protein 100-like | ||||
STRING | XP_010244507.1 | 1e-125 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61430.1 | 3e-99 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
---|---|---|---|
|