PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_023961-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 302aa MW: 34105.7 Da PI: 4.9201

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_023961-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119	1.8e-37	23	79	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk ++++ NNU_023961-RA 23 PNCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRRAK 79 58***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	6	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.407	23	77	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-31	23	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	25	61	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MIQSAPGTMT MDRRWKPTVE LAPNCPRCAS PNTKFCYYNN YSLSQPRYFC KGCRRYWTKG 60 GSLRNVPVGG GCRKTRRAKS ARLPQTEPTS MFLRCTQPSS TFSRESQPSD GKRTVAPTTE 120 PTDVSNIDLA AVFAKFVSEN SCFDSGFAVP ELSSENEMDA SFNLSSSLNS NEIAEDHNVV 180 EWQRPSDVAL QAHFIEESPS PQMFPDDQFE FNYKQQEERI SHFTVQDLSS FEFPPLVSDG 240 IDHGALWSDA PSMPNFTWQP AELQKGIESF PSNDHLTTFH PNLQNDNWSS FDLPSYEAFS 300 RP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010244049.1	0.0	PREDICTED: uncharacterized protein LOC104587962
TrEMBL	A0A1U7YX59	0.0	A0A1U7YX59_NELNU; uncharacterized protein LOC104587962
STRING	XP_010244049.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	2e-39	Dof family protein