PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_023916-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NF-YB | ||||||||
Protein Properties | Length: 234aa MW: 25927 Da PI: 7.4156 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 177.3 | 1.5e-55 | 51 | 147 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 vreqdrf+Pianv+rim+kvlPa+akis+daket+qecvse+isf+t+ea+d+cqre+rkti++dd+lwa+++lGf+dy+epl+vyl++yre+ege NNU_023916-RA 51 VREQDRFMPIANVIRIMRKVLPAHAKISDDAKETIQECVSEYISFITGEANDRCQREQRKTITADDVLWAMSKLGFDDYIEPLTVYLQRYREFEGE 146 69*********************************************************************************************9 PP NF-YB 97 k 97 + NNU_023916-RA 147 R 147 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.6E-50 | 47 | 151 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.55E-38 | 54 | 153 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.1E-25 | 57 | 121 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.3E-16 | 85 | 103 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 88 | 104 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.3E-16 | 104 | 122 | No hit | No description |
PRINTS | PR00615 | 1.3E-16 | 123 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MERAGFHGYQ RHPKSGSGMK MMVAANINHS SSNSQSTVVD DMSERDSGCT VREQDRFMPI 60 ANVIRIMRKV LPAHAKISDD AKETIQECVS EYISFITGEA NDRCQREQRK TITADDVLWA 120 MSKLGFDDYI EPLTVYLQRY REFEGERGSI RGGDPLVKRT ADLGGHALGI AAFTPAFHMG 180 VGVGHQHQHG HGVFGAAING GYRAMTNNNS SQPAPTINDH RISSDSYQPT YKHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 4e-61 | 47 | 142 | 2 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010243940.1 | 1e-178 | PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 | ||||
Refseq | XP_010243941.1 | 1e-178 | PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X2 | ||||
Swissprot | Q84W66 | 8e-69 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A1U7Z9X6 | 1e-176 | A0A1U7Z9X6_NELNU; nuclear transcription factor Y subunit B-1-like isoform X1 | ||||
STRING | XP_010243941.1 | 1e-177 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.1 | 8e-71 | nuclear factor Y, subunit B6 |