PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_023704-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 339aa MW: 36291.9 Da PI: 8.3498

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_023704-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.6e-12	51	75	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f+rtG+C yG+rC+F+H++ NNU_023704-RA 51 EPDCVYFMRTGFCGYGARCRFNHPR 75 789********************96 PP
2	zf-CCCH	22.8	1.6e-07	101	117	11	27
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 +tGtCk+G++Ck++H++ NNU_023704-RA 101 QTGTCKFGASCKYHHPR 117 79*************96 PP
3	zf-CCCH	32.9	1.1e-10	138	163	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG+Ck+G +CkF+H++ NNU_023704-RA 138 GEKECAYYVKTGHCKFGVTCKFHHPQ 163 7899********************97 PP
4	zf-CCCH	41	3.2e-13	293	318	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG+Ck+G++Ck++H+ NNU_023704-RA 293 PGQPECQYYMRTGECKFGSSCKYHHP 318 5789*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	4.4E-7	48	75	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.727	48	76	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-9	51	75	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-6	52	77	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.1E-6	54	75	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.14	94	117	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.16	101	118	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-5	101	117	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-4	136	163	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.258	136	164	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.19E-6	138	164	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-8	138	163	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.0E-4	142	162	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-7	292	319	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.342	292	320	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-10	294	318	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-6	296	320	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.4E-5	298	318	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEMYGRSPAL EGSQSDPPVG WNSPGAETGL EEPMWQLGLG SRDSYPERPN EPDCVYFMRT 60 GFCGYGARCR FNHPRDRSAV LGSARPGAGE YPERVGQPVC QTGTCKFGAS CKYHHPRHGG 120 GSAIPVSLNY HGYPLRPGEK ECAYYVKTGH CKFGVTCKFH HPQPAGVSVP APAPQFYPTV 180 QSPSVPSQQY GGMSASWQVA RSPLLPGSYV QGAYGHVLLS PGVVPIPGWS PYPAPVSPVA 240 SPGAQPTVGG GPIYGVTQLS PSTPAYAGPY PPLPSSAGPS GSSQKEHVYP ERPGQPECQY 300 YMRTGECKFG SSCKYHHPLE WITPKTNCVL SPMGLPLRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010243539.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 32
Swissprot	Q84W91	1e-149	C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBL	A0A1U7Z7H3	0.0	A0A1U7Z7H3_NELNU; zinc finger CCCH domain-containing protein 32
STRING	XP_010243539.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	1e-133	C3H family protein