PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_023405-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Nin-like

Protein Properties

Length: 926aa MW: 102961 Da PI: 6.3248

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_023405-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.5	6.3e-29	620	670	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ NNU_023405-RA 620 EKIISLQVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 670 789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.836	609	690	IPR003035	RWP-RK domain
Pfam	PF02042	7.6E-25	623	670	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.7E-20	820	914	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-20	827	909	No hit	No description
SMART	SM00666	3.9E-23	828	911	IPR000270	PB1 domain
PROSITE profile	PS51745	25.056	828	911	IPR000270	PB1 domain
CDD	cd06407	4.64E-35	829	910	No hit	No description
Pfam	PF00564	1.8E-18	829	910	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MEDGFFPPNT ELGTLSNTPE DFDLSNELLL GGCWLETSGG SDFLQPGWSS TSAALSDSSY 60 FFPTPEISAG SLNPVPPRTD PEETTGSSFL ANQPHVETET EDDIRTPNTV ISANSSGRAE 120 CYPAIGSSKL KKKWWIGPSS NPGPSVRERL IQAVGYIRES TKDRDVLIQI WVPVKRGGKH 180 VLTTDGQPFS LDPNCRRLAN YRNASLNYQF PAEENSEETV GLPGRVFLGK VPEWTPDVRF 240 YDSDEYPRID YAQRCDVRGT VALPVFERTS RTCLGVVEVV MTTQKINYRP EFESVCRALE 300 AVDLRSSEVP MSSHLKVTSN SYQAALPEIL EVLRVACETH SLPLAQTWVP CIQQCKGGYR 360 HSDDNYADCV STMDSACHMG DPLLWGFHEA CSEHHFFRGQ GVVGKAFTTN QLCFSTDVTT 420 FSKTEYPLLH YARMFGLRAA VAIHLRSTRT ETTDYVLEFF LPVDCVDIEK QKVILNSLFI 480 IVQQVRQSLQ VITDKELVEE TDFLVSEVTT PSNGTSDRKK LSNFRSMESI GSCKEESSEI 540 AYIMESQQKD KSVPVVFQKE EPTVEYKITT NGKMLSEYEQ HLRDPGPRYS IDCHGKSSDF 600 GEGTYSSGGR TGEKRRTKTE KIISLQVLQQ YFAGSLKDAA KSIGVCPTTL KRICRQHGIT 660 RWPSRKIKKV GHSLRKLKVV IDSVQGADGV FQIGSFHLNF SDPTSPNDDP KSLKATSWGA 720 ISSLVAPPKS PSTSYTQSSV SSHCISTGIQ QHAHAIHLAG SEDISVSEKA GGVLTRSCND 780 AELHASSQEE IKPLARSHTQ KSLCEHPTLE NLPPLPRSGS HVSQSVGAIR VKVTYEEDKI 840 RFSLQSTWGF KDLQQEIAER FNIDDTNRIE LKYMVNDSKW VLLTCDADLG DCIDIYKSSR 900 SRTIKLFVHQ VSHPSMETSL VRSGPS

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MEDGFFPPNT ELGTLSNTPE DFDLSNELLL GGCWLETSGG SDFLQPGWSS TSAALSDSSY  60
FFPTPEISAG SLNPVPPRTD PEETTGSSFL ANQPHVETET EDDIRTPNTV ISANSSGRAE  120
CYPAIGSSKL KKKWWIGPSS NPGPSVRERL IQAVGYIRES TKDRDVLIQI WVPVKRGGKH  180
VLTTDGQPFS LDPNCRRLAN YRNASLNYQF PAEENSEETV GLPGRVFLGK VPEWTPDVRF  240
YDSDEYPRID YAQRCDVRGT VALPVFERTS RTCLGVVEVV MTTQKINYRP EFESVCRALE  300
AVDLRSSEVP MSSHLKVTSN SYQAALPEIL EVLRVACETH SLPLAQTWVP CIQQCKGGYR  360
HSDDNYADCV STMDSACHMG DPLLWGFHEA CSEHHFFRGQ GVVGKAFTTN QLCFSTDVTT  420
FSKTEYPLLH YARMFGLRAA VAIHLRSTRT ETTDYVLEFF LPVDCVDIEK QKVILNSLFI  480
IVQQVRQSLQ VITDKELVEE TDFLVSEVTT PSNGTSDRKK LSNFRSMESI GSCKEESSEI  540
AYIMESQQKD KSVPVVFQKE EPTVEYKITT NGKMLSEYEQ HLRDPGPRYS IDCHGKSSDF  600
GEGTYSSGGR TGEKRRTKTE KIISLQVLQQ YFAGSLKDAA KSIGVCPTTL KRICRQHGIT  660
RWPSRKIKKV GHSLRKLKVV IDSVQGADGV FQIGSFHLNF SDPTSPNDDP KSLKATSWGA  720
ISSLVAPPKS PSTSYTQSSV SSHCISTGIQ QHAHAIHLAG SEDISVSEKA GGVLTRSCND  780
AELHASSQEE IKPLARSHTQ KSLCEHPTLE NLPPLPRSGS HVSQSVGAIR VKVTYEEDKI  840
RFSLQSTWGF KDLQQEIAER FNIDDTNRIE LKYMVNDSKW VLLTCDADLG DCIDIYKSSR  900
SRTIKLFVHQ VSHPSMETSL VRSGPS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010242905.1	0.0	PREDICTED: protein NLP4-like
TrEMBL	A0A1U7YXU9	0.0	A0A1U7YXU9_NELNU; protein NLP4-like
STRING	XP_010242905.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein