PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023337-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 568aa    MW: 63615.4 Da    PI: 4.644
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023337-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.6e-52181442128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    ppGfrFhPtdeel+ +yLk+k+ +++++l +vi+e+d+yk++P++Lp +  +k+++++w+fFs+rd++y++g r nrat+ gyWkatgkd+++++ 
  NNU_023337-RA  18 PPGFRFHPTDEELILYYLKRKMCRRRIQL-NVIAEIDVYKWDPQELPgQsLLKNGDRQWFFFSPRDRRYPNGGRLNRATRLGYWKATGKDRNITC- 111
                    8****************************.99**************96347788999**************************************. PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++++vg+kktLvfykgrap+ge+tdWvmhey++
  NNU_023337-RA 112 NSRTVGVKKTLVFYKGRAPSGERTDWVMHEYTM 144
                    999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5914167IPR003441NAC domain
PROSITE profilePS5100554.84917167IPR003441NAC domain
PfamPF023656.3E-2718143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MKTTQLSSDD FGDAKAWPPG FRFHPTDEEL ILYYLKRKMC RRRIQLNVIA EIDVYKWDPQ  60
ELPGQSLLKN GDRQWFFFSP RDRRYPNGGR LNRATRLGYW KATGKDRNIT CNSRTVGVKK  120
TLVFYKGRAP SGERTDWVMH EYTMDEEELK RCSVVQDCYA LYKVYKKSGP GPKNGEQYGA  180
PFREEEWADD DNPADTTTVQ QPNGFSSVES FTVYDQGPPP KIDTEEIWGR IADEPQINQP  240
HIDDFADLLQ QVDGEEGAQS TMIRPSFGEA TSAEPSTVAL SCEQQYNAQA SLNVTQSATS  300
YLYSSEAPEV TSAPNISGQY PLGFAEEDFL EINDLMDQEA AYPIMGSSTS RDNLGFEETT  360
RLDGMDAFFD AELFFNDLVQ ETALHPNLDN LGDGMANQLD YQLSSHLDDA HQISSQLWTH  420
DQRSSVFQST ESNQVVVAPS TSGVIHAANS ANPSETRQNQ GSNGRASPDS WFASALWSFV  480
ESIPTNPASA SESALINRAF ERMSSFGRVQ ISARNGNVAR GRAAQTRGGN RGFLFLAFLG  540
VLCAVLWAMM IGTTFKVFKT FLWRYISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-491816718165NO APICAL MERISTEM PROTEIN
1ut4_B4e-491816718165NO APICAL MERISTEM PROTEIN
1ut7_A4e-491816718165NO APICAL MERISTEM PROTEIN
1ut7_B4e-491816718165NO APICAL MERISTEM PROTEIN
4dul_A4e-491816718165NAC domain-containing protein 19
4dul_B4e-491816718165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243336.10.0PREDICTED: NAC domain-containing protein 17-like
RefseqXP_010243338.10.0PREDICTED: NAC domain-containing protein 17-like
TrEMBLA0A1U7YYW50.0A0A1U7YYW5_NELNU; NAC domain-containing protein 17-like
STRINGXP_010243336.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-136NAC domain containing protein 17