PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023103-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRF
Protein Properties Length: 436aa    MW: 47170.6 Da    PI: 7.6036
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023103-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.92.3e-25187230144
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                    d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  NNU_023103-RA 187 DSEPGRCRRTDGKKWRCSRDVVAGHKYCERHMHRGRNRSRKPVE 230
                    689**************************************987 PP
2QLQ51.53.1e-1870105237
            QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                    +F+ aQ+q+L+ Q+l++Ky++a++ vP+eLlq+i+k
  NNU_023103-RA  70 YFSLAQWQELELQALIFKYMLAGAAVPAELLQPIKK 105
                    7*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.5E-1069105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.13470105IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.9E-1370103IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.026187231IPR014977WRC domain
PfamPF088792.0E-21189230IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDYHLKQWRN LHESEEPPSA KIPRLLLEPH QQPSGSALPL FVPEPNSRIS NLSAFPDSTT  60
TTRFPRMGGY FSLAQWQELE LQALIFKYML AGAAVPAELL QPIKKSLLGS SACYLQYPYQ  120
QYQHYQTATS SFDRFVLLID CILEAGDFCV NFIGFIGFID LFADATVGFR HVGAVLQSGY  180
WGRSVVDSEP GRCRRTDGKK WRCSRDVVAG HKYCERHMHR GRNRSRKPVE IPTPATATGG  240
GLNDTNTNPV AASPLTAAVT GGGTHFALAG SSPSINLFQQ LNQSQRSSEG GIVGTGGRGL  300
LETHQDKVSA EGRADGRILR HFFDDWPRSQ PEPNSVGCNT SPTTSTTCLS ISIPGNASSD  360
FSLKLSTGNG DEPGSRSDGG DRHQMNWASG WGTHPVASMG GPLAEALRSS TSNSSPTSVL  420
HELPRASASE TSSVST
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4779845e-33AM477984.2 Vitis vinifera contig VV78X100436.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242635.10.0PREDICTED: growth-regulating factor 3-like
TrEMBLA0A1U7YX870.0A0A1U7YX87_NELNU; growth-regulating factor 3-like
STRINGXP_010242635.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.14e-47growth-regulating factor 4