PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_023012-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 334aa MW: 37161.9 Da PI: 6.6878 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ +G g+W++++r g+ R++k+c++rw +yl NNU_023012-RA 14 RGLWSPEEDEKLINYISTHGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2.1e-16 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++++eE l++++++ lG++ W+ Ia++++ gRt++++k++w+ NNU_023012-RA 67 RGSFSPEEASLIIQLHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.34 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.66E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.732 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.72E-12 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MGRHSCCSKQ KVRRGLWSPE EDEKLINYIS THGHGCWSSV PRLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPEEASLIIQ LHRILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLIMSS 120 DSVSDLTTLP DVCNPVGFGE GLLTVKANPN IIIGDQQQHM PQGINHDDFE PDMIDQDVNY 180 WVSASPAASL PLQSETNSVN PIWRSDYDQT NHHHGHQSDS PKDLNDMKFT TTVYDELLLG 240 SSVMPKLCEI LDMDKCGMTS SSASHEGDPA SNMIPPCTQL QSYPYNLRHM ATNPIGCTDA 300 TMPALSFSSS SLSSSLSCGA MNPNLPPNWV QLLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010242247.1 | 0.0 | PREDICTED: transcription factor MYB26-like | ||||
TrEMBL | A0A1U7YQA9 | 0.0 | A0A1U7YQA9_NELNU; transcription factor MYB26-like | ||||
STRING | XP_010242247.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 2e-75 | myb domain protein 26 |