PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023010-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 368aa    MW: 41857.2 Da    PI: 4.7053
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023010-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.86.1e-32341242102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y+++ed+++ +++sws+  nsf+++d+++f++++Lp+yFkh nf+SF+RQL +YgF+kv+ ++         weF+++ F  g+k+ll++i
  NNU_023010-RA  34 FLTKTYDMIEDPSTGSIVSWSRARNSFIIWDSHKFSTNLLPRYFKHCNFSSFIRQL-TYGFRKVDPDR---------WEFANEGFLGGQKHLLKNI 119
                    9*******************************************************.7*******999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    kr+++
  NNU_023010-RA 120 KRRRN 124
                    **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.52E-3029122IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3430122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-5630122IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.4E-2834122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-93457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-97284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MERVIIKEEE VTVVGTALPP LPMEGLHDTS PPPFLTKTYD MIEDPSTGSI VSWSRARNSF  60
IIWDSHKFST NLLPRYFKHC NFSSFIRQLT YGFRKVDPDR WEFANEGFLG GQKHLLKNIK  120
RRRNVSQHMQ QQVAGGPCLE LGHCGSEDEI DRLKGDWNLL MVEIVNLGHQ QQTSRKQLVR  180
MEEQLQGTER KQQQMMVFLA RALRNPLFVQ QLIHRNEQKK EMGGVGRKRR LPPSRSTENF  240
PEEIIPIPSE TTWFVGYPNQ GQEEVPETES DMGTLFSVTI DNEAASSPIQ DPKADAISKT  300
NEPDLSCVAN DISWAELLDE ELIAGDGGDE IHQSEIDIPV EDLVVETPDW GEDVQDLVKQ  360
MGYLGSNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-213212218120Heat shock factor protein 1
5d5u_B3e-213212227129Heat shock factor protein 1
5d5v_B3e-213212227129Heat shock factor protein 1
5d5v_D3e-213212227129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242245.10.0PREDICTED: heat shock factor protein HSF30-like
SwissprotP411521e-123HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A1U7Z5Y10.0A0A1U7Z5Y1_NELNU; heat shock factor protein HSF30-like
STRINGXP_010242245.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-109heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]