PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_023001-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 541aa MW: 58867 Da PI: 9.1001

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_023001-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H NNU_023001-RA 85 FVCEICNKGFQRDQNLQLHRRGH 107 89*******************88 PP
2	zf-C2H2	12.6	0.00041	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ NNU_023001-RA 161 WKCDKCSKRYAVQSDWKAHSKTC 183 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.9E-7	84	107	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	84	107	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	85	107	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	85	107	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	126	156	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.7E-4	149	182	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.9E-7	156	181	No hit	No description
SMART	SM00355	140	161	181	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MMKGLIIQQH PAVEENMSNL TSASGEASVS SGNRAETGTL YPQQSFASPN QTQVVKKKRN 60 LPGNPDPDAE VIALSPRTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTSKE 120 VRKKVYVCPE PSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS 180 KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAA NTLLSTQPGP STSHINLQPQ 240 FNSHDLQAFS LKREQQQQQL HFNQRSEVPP WLACSSVVLG AGPGPPPIDL SSSIFSTRLD 300 QEFSRTQPST HQENFNSSPT PSLPPYHPLA SPHMSATALL QKAAQMGATM SKPSSSATLR 360 PHQAHMLAAN TGNATKSVPT TTTGFGLGLS SREEMESGFV HVMDAFANKA GFASSLIDSV 420 CATAGSGGPS LLQDMMNSFS STTGFDGSSF QDAFGMLSSK RNGNLNEALM KTTSSTTHIG 480 RNEGGGSHGG GVAGGNDGLT RDFLGLRAFS HRDILNIAGF DHCMTSSPYD QTIQNQKPWQ 540 G

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MMKGLIIQQH PAVEENMSNL TSASGEASVS SGNRAETGTL YPQQSFASPN QTQVVKKKRN  60
LPGNPDPDAE VIALSPRTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTSKE  120
VRKKVYVCPE PSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS  180
KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAA NTLLSTQPGP STSHINLQPQ  240
FNSHDLQAFS LKREQQQQQL HFNQRSEVPP WLACSSVVLG AGPGPPPIDL SSSIFSTRLD  300
QEFSRTQPST HQENFNSSPT PSLPPYHPLA SPHMSATALL QKAAQMGATM SKPSSSATLR  360
PHQAHMLAAN TGNATKSVPT TTTGFGLGLS SREEMESGFV HVMDAFANKA GFASSLIDSV  420
CATAGSGGPS LLQDMMNSFS STTGFDGSSF QDAFGMLSSK RNGNLNEALM KTTSSTTHIG  480
RNEGGGSHGG GVAGGNDGLT RDFLGLRAFS HRDILNIAGF DHCMTSSPYD QTIQNQKPWQ  540
G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-35	157	218	3	64	Zinc finger protein JACKDAW
5b3h_F	7e-35	157	218	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	123	KLKQRTSKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010242234.1	0.0	PREDICTED: protein indeterminate-domain 7-like isoform X1
Swissprot	Q8H1F5	1e-124	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1U7Z4G9	0.0	A0A1U7Z4G9_NELNU; protein indeterminate-domain 7-like isoform X1
STRING	XP_010242234.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-126	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]