PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_022994-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 23144.2 Da PI: 8.8333 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.1 | 2.2e-36 | 13 | 112 | 2 | 101 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 CaaCk++r+kC+k+C+la+yfpa+ ++f nvhkl+G++n++++l+++++ +r++a++s+++eAear dPv G++g+++kl +q++ k+el+ + NNU_022994-RA 13 CAACKHQRKKCKKGCPLAQYFPAKLYQDFVNVHKLYGVANIVRILRNIEPYQRKAAAQSIMFEAEARRVDPVLGSFGLVHKLISQIDAYKKELHII 108 **********************************************************************************************99 PP DUF260 98 keel 101 +++l NNU_022994-RA 109 NQQL 112 9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.896 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-33 | 13 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MNEKSTGHAG HGCAACKHQR KKCKKGCPLA QYFPAKLYQD FVNVHKLYGV ANIVRILRNI 60 EPYQRKAAAQ SIMFEAEARR VDPVLGSFGL VHKLISQIDA YKKELHIINQ QLSYYRQQEE 120 SQKLQQLRWF QIASSSSLPI NAYNGGSMEN FGDDQTANAY TSFILQEFED IKPPFDFNSS 180 DQEINVYFNN MPPANNNVQV FR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-26 | 5 | 119 | 4 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-26 | 5 | 119 | 4 | 118 | LOB family transfactor Ramosa2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010242281.1 | 1e-151 | PREDICTED: LOB domain-containing protein 25-like | ||||
TrEMBL | A0A1U7Z608 | 1e-150 | A0A1U7Z608_NELNU; LOB domain-containing protein 25-like | ||||
STRING | XP_010242281.1 | 1e-151 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 6e-32 | LOB domain-containing protein 22 |