PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_022721-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 328aa MW: 36109.9 Da PI: 7.0832

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_022721-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.4	4.7e-36	51	107	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++ lkcprCdstntkfCyynny+ sqPr+fCkaCrr+WtkGG+lrnvPvGggr++++ NNU_022721-RA 51 STPLKCPRCDSTNTKFCYYNNYNRSQPRHFCKACRRHWTKGGTLRNVPVGGGRKNKR 107 5679***********************************************976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.9E-31	53	106	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-22	53	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.773	54	108	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGLSSKQVSV DGLVLDWGHG LLQPGALDLS KPPQSPQVRQ EQQQEQQQQQ STPLKCPRCD 60 STNTKFCYYN NYNRSQPRHF CKACRRHWTK GGTLRNVPVG GGRKNKRLKT THNTTTTTTT 120 TAAGKAANPT TSTSGRVSRN TTNNMAIQAQ QQLQLQQQQH LPLPFGDSRS ISDILYQSLL 180 HPPTSSSLPL SPQQDYTNKV SSNDDGEIIN ISSDSLLGSP LSLPPNPIFP FTSLSSFVDN 240 PTSMSSFTCG FQPSDVYNSY TGEAETAEDS TITTTTITTT NTTTMPTTPL WQTPTTSGFM 300 DSTSYWSWDD LTSLITTDVK QPWDDSLQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010242004.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1U7YSI2	0.0	A0A1U7YSI2_NELNU; dof zinc finger protein DOF1.4-like
STRING	XP_010242004.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	2e-28	Dof family protein