PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_022609-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | TCP | ||||||||
Protein Properties | Length: 217aa MW: 23396.4 Da PI: 8.9387 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119 | 5.7e-37 | 32 | 126 | 3 | 81 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaesssss 81 ++k+++ ++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt ss+s + ++ssss+ NNU_022609-RA 32 PRKSSSRDRHTKVNGRGRRIRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTgtvpapsestptgvmppA-SSPSTSAPVSSSST 126 799************************************************************655444443333333221.11111112222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-30 | 36 | 116 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.125 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGSELILRNS SQPGEQNTVS TRDVSKIQLT LPRKSSSRDR HTKVNGRGRR IRMPALCAAR 60 IFQLTRELGH RSDGETIEWL LRQAEPSIIA ATGTGTVPAP SESTPTGVMP PASSPSTSAP 120 VSSSSTSISS AIKARPVAAV PENHRVPTGF LAVSSFETAP PICRLDLCQP PVGLEFPSNG 180 YRHMPFTAML LQPTSEGEEQ PHPPPPPQQQ QEEVNKH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010241853.1 | 1e-156 | PREDICTED: transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 2e-41 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A1U7YVF8 | 1e-155 | A0A1U7YVF8_NELNU; transcription factor TCP11 | ||||
STRING | XP_010241853.1 | 1e-155 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 1e-37 | TCP family protein |