PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022583-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family E2F/DP
Protein Properties Length: 151aa    MW: 15837.4 Da    PI: 9.3132
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022583-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP27.64.9e-0998134238
        E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse..d 38 
                    ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e  d
  NNU_022583-RA  98 TGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfaD 134
                    689********...*****999*************99661 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-1993144IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013720.008597149IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-6100130IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MVTGGNQPED GEKNPASIAR GGIARSWGTT FSGQSVSTSG SAGSPSSRSE LAMATPASEN  60
TFVRLNHLDI HGDDSGSQGA VVGRKKKRGQ RAVGGDKTGR GLRQFSMKVC EKVESKGRTT  120
YNEVADELVA EFADPSNSLA SPDQVKCFRT S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-1891141151PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241817.17e-99PREDICTED: transcription factor-like protein DPB
RefseqXP_010241818.17e-99PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY22e-52DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1U7YP912e-97A0A1U7YP91_NELNU; transcription factor-like protein DPB
STRINGXP_010241817.13e-98(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.14e-41Transcription factor DP