PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_022540-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 456aa MW: 52110.9 Da PI: 6.0249

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_022540-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.7	6e-13	10	59	36	87
trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +k++e g++rs+k+Ckek+en+ k++k++k g+ ++ + +t+++f+qlea NNU_022540-RA 10 RKLAELGYHRSAKKCKEKFENVYKYHKRTKGGRASK--HDGKTYRFFEQLEA 59 6889****************************96..66678*****85 PP
2	trihelix	106.9	1.4e-33	274	359	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+ ++ +++++ k+plWee+s++m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a NNU_022540-RA 274 RWPKAEVQALINLRTTLDLKYQENGPKGPLWEEISSAMKKLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 359 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.9E-8	8	60	No hit	No description
PROSITE profile	PS50090	7.526	267	331	IPR017877	Myb-like domain
SMART	SM00717	8.2E-5	271	333	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.68E-5	272	333	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.5E-5	272	330	IPR009057	Homeodomain-like
Pfam	PF13837	3.2E-24	273	360	No hit	No description
CDD	cd12203	1.10E-28	273	338	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MECFGTVVIR KLAELGYHRS AKKCKEKFEN VYKYHKRTKG GRASKHDGKT YRFFEQLEAL 60 DNHPLPPLSP HKVMQTPTAT VPPTTATMTA TTMATANPPG VVVQHNVPAS VQNLSANTEF 120 VSTSATTSSS TDSDEESEGT RKKKMKLMTF FERLMKEMIE KQETLQKRFL EAIEKRERER 180 MEREEAWKVQ EMARMNRELE MLVQERSIAA AKDAAVIAFL QKISEQSSAV QLMEVQLPEK 240 QAPPEKAVDP PRAESTDNVN ANAVVTFSPV SSSRWPKAEV QALINLRTTL DLKYQENGPK 300 GPLWEEISSA MKKLGYNRSA KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL 360 YREKTKKVDN SFINPSYELK PEDLMRQMMS RPEQVMPLRQ EPPRPDSVMD DIGSENMDQN 420 QDEDCDDDDD EEDEDEASAY GIVTNTTNPS SMAMVE

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MECFGTVVIR KLAELGYHRS AKKCKEKFEN VYKYHKRTKG GRASKHDGKT YRFFEQLEAL  60
DNHPLPPLSP HKVMQTPTAT VPPTTATMTA TTMATANPPG VVVQHNVPAS VQNLSANTEF  120
VSTSATTSSS TDSDEESEGT RKKKMKLMTF FERLMKEMIE KQETLQKRFL EAIEKRERER  180
MEREEAWKVQ EMARMNRELE MLVQERSIAA AKDAAVIAFL QKISEQSSAV QLMEVQLPEK  240
QAPPEKAVDP PRAESTDNVN ANAVVTFSPV SSSRWPKAEV QALINLRTTL DLKYQENGPK  300
GPLWEEISSA MKKLGYNRSA KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL  360
YREKTKKVDN SFINPSYELK PEDLMRQMMS RPEQVMPLRQ EPPRPDSVMD DIGSENMDQN  420
QDEDCDDDDD EEDEDEASAY GIVTNTTNPS SMAMVE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107139	2e-36	AK107139.1 Oryza sativa Japonica Group cDNA clone:002-124-D01, full insert sequence.
GenBank	AL606587	2e-36	AL606587.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence.
GenBank	AP014960	2e-36	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	2e-36	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855197	2e-36	CR855197.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0115B09, complete sequence.
GenBank	X68261	2e-36	X68261.1 O.sativa gt-2 gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241710.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-112	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A1U7YV28	0.0	A0A1U7YV28_NELNU; trihelix transcription factor GT-2-like
STRING	XP_010241710.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	8e-72	Trihelix family protein