PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022098-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 608aa    MW: 67826.4 Da    PI: 4.7834
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022098-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.6e-54131431128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lp GfrF+Ptdeel+++yL+ k++gk+ ++ +vi+evd++k+ePwdLp+   +k+++ ew+fFs+rd+ky++g+r+nrat++gyWkatgkd+++++
  NNU_022098-RA  13 LPLGFRFRPTDEELINHYLRCKINGKEDKV-RVIPEVDVCKWEPWDLPElsVIKNGDPEWFFFSPRDRKYPNGHRSNRATEAGYWKATGKDRTIKA 107
                    699************************999.99**************94448888999*************************************9 PP

            NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +  + +l+g+kktLvfy+grap+g++t+W+mheyr+
  NNU_022098-RA 108 RtsGMHLIGMKKTLVFYRGRAPNGQRTNWIMHEYRA 143
                    9767778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-6111166IPR003441NAC domain
PROSITE profilePS5100558.50413166IPR003441NAC domain
PfamPF023655.5E-2814142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MPDEMGVLSL GALPLGFRFR PTDEELINHY LRCKINGKED KVRVIPEVDV CKWEPWDLPE  60
LSVIKNGDPE WFFFSPRDRK YPNGHRSNRA TEAGYWKATG KDRTIKARTS GMHLIGMKKT  120
LVFYRGRAPN GQRTNWIMHE YRATEEELDG THPGQGAFVL CRLFKKSDVR IEHSNCDEID  180
RTGSSPTARS SPEATPRRVA LVETTPESDM HVGKHTEGIE RWLEEKVDNM TPDAVLSVDG  240
QCNSSFISDV EDHEPEGTIT ELEEDLNLFY EPEFEPLDSK IFSPIHSQTY TGLELKYMSL  300
LSGDFGNNSG MDFQDGTSEQ DVSISEFLEA VINNPDESGE ELTSHKNAVD SKLPASGLQQ  360
PHFDDNGRVC MISGEWGPAY GKDSGSSSET DTDMAQPQAQ NIQSGPESSS WFDDFAGIEN  420
SYLGTSVSER GFGAEVGPLG GDSFLGLDQQ SLVYNSGAVG GGSGIRLRTR QPQYQLNSLD  480
IMSQGTAPRR IRLQKKLSRR VYSSCNKARV DAEEHEEKPK IAELQGRETV KAPSTEEVQK  540
RTTSTLDSEL AQEFDKKLRF RSKQDGVVFG EQQGLSSLFK DRRPGFPSFY VVGVAVVAML  600
SLFVWVLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-45816615168NAC domain-containing protein 19
3swm_B2e-45816615168NAC domain-containing protein 19
3swm_C2e-45816615168NAC domain-containing protein 19
3swm_D2e-45816615168NAC domain-containing protein 19
3swp_A2e-45816615168NAC domain-containing protein 19
3swp_B2e-45816615168NAC domain-containing protein 19
3swp_C2e-45816615168NAC domain-containing protein 19
3swp_D2e-45816615168NAC domain-containing protein 19
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241065.10.0PREDICTED: protein NTM1-like 9 isoform X3
TrEMBLA0A1U7YMJ00.0A0A1U7YMJ0_NELNU; protein NTM1-like 9 isoform X3
STRINGXP_010241065.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-117NAC 014