PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022065-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 448aa    MW: 50029.1 Da    PI: 6.6936
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022065-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.76.5e-88464402373
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl..fsevsPilkfs 94 
                    ++lLl+cA a++++d +laq++++ l++ as  gd++qRl++ f++AL  r +r  ++ +  ++ +++ ++  +++++++++l  ++++ P+++f+
  NNU_022065-RA  46 EKLLLHCASAIENNDVTLAQQVMWVLNNVASAVGDSNQRLISWFLRALIFRASRVFPTAAMNFHGTTALDQMiQTRSMSVTELagYVDLIPWHRFG 141
                    589***************************************************9999888886666655553666666666699*********** PP

           GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...... 181
                    + + N+aIl+a++g  rvHiiDf+i++++QWp+L++aLa+Rpegpps+ iT+ +   ++    + +  ++g rLa+fA++ +vpf f+v+      
  NNU_022065-RA 142 FCASNSAILKAIQGYPRVHIIDFSITHCMQWPTLIDALAKRPEGPPSVGITVPSCRPPVpplLNVSSDQVGFRLANFAKTRDVPFAFHVIdcsssc 237
                    ***************************************************9777556677999999***************************** PP

           GRAS 182 ................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                                     ++ +++l++ +L+++ +Eal+Vn++  l +l+++++sl++   ++L+++k+l+P +++vv++++d++s+s+  r++ ++
  NNU_022065-RA 238 sksagadtlsgdfsrsFHHLMSQLNPCMLDLRDDEALVVNCQNWLRYLPADHLSLRN---TFLEVIKGLNPCIMTVVDEDSDLDSSSLTSRITTSF 330
                    *****9999999888767778899***************************999999...************************************ PP

           GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                    +y +  fd+le+ lp+++ +r+ +E+  +g +i+n++   g +r+er e+  k ++r+++a F  +p++e+++ ++klll +++  g+ +++e++ 
  NNU_022065-RA 331 NYLWIPFDALETFLPKDNAQRMEYEAD-VGHKIENIIGFGGMQRIERSESGFKLSQRMKNANFLRIPFDEETVGEVKLLLDEHA-SGWGMKKEDDR 424
                    ***************************.********************************************************.8899******* PP

           GRAS 358 lvlgWkdrpLvsvSaW 373
                    lvl+Wk+++ v+++aW
  NNU_022065-RA 425 LVLTWKGHNSVFATAW 440
                    **************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.35519422IPR005202Transcription factor GRAS
PfamPF035142.3E-8546440IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MKTERRGNSA PISLPYSYHG LLFNNPQGSL PEAALKGRRL DGACTEKLLL HCASAIENND  60
VTLAQQVMWV LNNVASAVGD SNQRLISWFL RALIFRASRV FPTAAMNFHG TTALDQMIQT  120
RSMSVTELAG YVDLIPWHRF GFCASNSAIL KAIQGYPRVH IIDFSITHCM QWPTLIDALA  180
KRPEGPPSVG ITVPSCRPPV PPLLNVSSDQ VGFRLANFAK TRDVPFAFHV IDCSSSCSKS  240
AGADTLSGDF SRSFHHLMSQ LNPCMLDLRD DEALVVNCQN WLRYLPADHL SLRNTFLEVI  300
KGLNPCIMTV VDEDSDLDSS SLTSRITTSF NYLWIPFDAL ETFLPKDNAQ RMEYEADVGH  360
KIENIIGFGG MQRIERSESG FKLSQRMKNA NFLRIPFDEE TVGEVKLLLD EHASGWGMKK  420
EDDRLVLTWK GHNSVFATAW VPINFQSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B9e-494644234420Protein SHORT-ROOT
5b3h_E9e-494644234420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241015.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A1U7YQ670.0A0A1U7YQ67_NELNU; scarecrow-like protein 32
STRINGXP_010241015.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-114GRAS family protein