PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021903-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 359aa MW: 39961.8 Da PI: 6.3688

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021903-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.1	1.1e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++++G g+W++ +r g++R++k+c++rw +yl NNU_021903-RA 14 KGPWTPEEDQKLIEYIQKHGHGSWRALPRLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.7	4.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE++++++++ lG++ W++Ia+ ++ gRt++++k++w+++ NNU_021903-RA 67 RGKFSDEEEQIIINLHSVLGNK-WSAIANQLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.846	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.54E-32	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-18	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.15E-13	16	61	No hit	No description
PROSITE profile	PS51294	27.014	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-15	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.20E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MARSPCCDDS GLKKGPWTPE EDQKLIEYIQ KHGHGSWRAL PRLAGLNRCG KSCRLRWTNY 60 LRPDIRRGKF SDEEEQIIIN LHSVLGNKWS AIANQLPGRT DNEIKNYWNT HIRKKLLQMG 120 IDPVTHRPRT DLNLLANLPQ FLAVANLNNL MGSWDNSLRL QAEAAQLARS QLFQNLLQAN 180 MNTPTPPNSN PFNLLRSASF QGQNFAEHAG SNAQLEGLLS NLLGPGPDDH HTHHMPSTTS 240 TNLGIQEPSN VNDYNQILDS SVYLGGFGST LCDSNGSSIS DQNLISSSYD ISALDIIPPL 300 VSVDPKMEAK STPSTSTTFD AWGELNLDCE PTNYWGDMIE YVFYISILLS TNHLRGLGH

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MARSPCCDDS GLKKGPWTPE EDQKLIEYIQ KHGHGSWRAL PRLAGLNRCG KSCRLRWTNY  60
LRPDIRRGKF SDEEEQIIIN LHSVLGNKWS AIANQLPGRT DNEIKNYWNT HIRKKLLQMG  120
IDPVTHRPRT DLNLLANLPQ FLAVANLNNL MGSWDNSLRL QAEAAQLARS QLFQNLLQAN  180
MNTPTPPNSN PFNLLRSASF QGQNFAEHAG SNAQLEGLLS NLLGPGPDDH HTHHMPSTTS  240
TNLGIQEPSN VNDYNQILDS SVYLGGFGST LCDSNGSSIS DQNLISSSYD ISALDIIPPL  300
VSVDPKMEAK STPSTSTTFD AWGELNLDCE PTNYWGDMIE YVFYISILLS TNHLRGLGH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-32	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010240896.1	0.0	PREDICTED: transcription factor MYB39-like
Swissprot	Q9S9Z2	1e-91	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A1U7YPZ2	0.0	A0A1U7YPZ2_NELNU; transcription factor MYB39-like
STRING	XP_010240896.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	5e-91	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]