PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021902-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 351aa MW: 38768.7 Da PI: 6.5964

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021902-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.6e-18	20	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q G g+W++ +r g++R++k+c++rw +yl NNU_021902-RA 20 KGPWTPEEDQKLIAYIQQNGHGSWRALPRLAGLNRCGKSCRLRWTNYL 67 79********************************************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	73	118	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ G++ W++Ia++++ gRt++++k++w+++l NNU_021902-RA 73 RGKFSEEEEQVILNLHSIIGNK-WSAIASHLP-GRTDNEIKNFWNTHL 118 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-25	11	70	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.675	15	67	IPR017930	Myb domain
SuperFamily	SSF46689	1.76E-31	17	114	IPR009057	Homeodomain-like
SMART	SM00717	5.9E-15	19	69	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-16	20	67	IPR001005	SANT/Myb domain
CDD	cd00167	1.43E-11	22	67	No hit	No description
PROSITE profile	PS51294	26.182	68	122	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-27	71	122	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-16	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-15	73	118	IPR001005	SANT/Myb domain
CDD	cd00167	4.63E-12	75	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MVQWGMMGRS PCCDDNGLKK GPWTPEEDQK LIAYIQQNGH GSWRALPRLA GLNRCGKSCR 60 LRWTNYLKPD IKRGKFSEEE EQVILNLHSI IGNKWSAIAS HLPGRTDNEI KNFWNTHLKK 120 KLLKAGIDPV THKPRTDLNL LDLPRLLAVA NIDLMNPLGN ALRLQAEAAQ LARNQLLQHL 180 VQAINTSVPQ TNVEAVSLLA SAPIQGYGHA EYLAPNTQLE GPLNNPQVVP NNSSGIPNNP 240 SCPGFHHYPQ MSSEFTDSEV QQPPNDSRIL DNSVYFGGVG INGVYNPGNN NNIIISSYIN 300 TNLDGCVPPL VSTSPENERK NVSINSTALD TWGDFNLLDF NAGDNWGDMI N

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MVQWGMMGRS PCCDDNGLKK GPWTPEEDQK LIAYIQQNGH GSWRALPRLA GLNRCGKSCR  60
LRWTNYLKPD IKRGKFSEEE EQVILNLHSI IGNKWSAIAS HLPGRTDNEI KNFWNTHLKK  120
KLLKAGIDPV THKPRTDLNL LDLPRLLAVA NIDLMNPLGN ALRLQAEAAQ LARNQLLQHL  180
VQAINTSVPQ TNVEAVSLLA SAPIQGYGHA EYLAPNTQLE GPLNNPQVVP NNSSGIPNNP  240
SCPGFHHYPQ MSSEFTDSEV QQPPNDSRIL DNSVYFGGVG INGVYNPGNN NNIIISSYIN  300
TNLDGCVPPL VSTSPENERK NVSINSTALD TWGDFNLLDF NAGDNWGDMI N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-30	18	122	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019056075.1	0.0	PREDICTED: transcription factor MYB39-like
Swissprot	Q9S9Z2	9e-92	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A1U8QCQ0	0.0	A0A1U8QCQ0_NELNU; transcription factor MYB39-like
STRING	XP_010240908.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	7e-80	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]