PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021882-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 308aa    MW: 35190.9 Da    PI: 8.4763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021882-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.4e-14101152155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  NNU_021882-RA 101 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YIQRGDQASIVGGAIEFVKELE 152
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.97E-1499156No hitNo description
SuperFamilySSF474595.89E-1799169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.307100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-11101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-14101168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MALEALSSND LSNFNYDTIT SGFLPKNKIV SDGVGSNLHF DGFRPLELHP TFEGSSPMMR  60
RNPFASVATD GRSNSATTTQ GRRKRRRKPR VCKNKEEAET QRMTHIAVER NRRKQMNEHL  120
AVLRSLMPES YIQRGDQASI VGGAIEFVKE LEQLLQFLEV QKRQLLQQRE GPLDNNRSSS  180
NNYSNNFIDP PFVQFFTYPQ YSWCQAPREY PQDNRVAIAD IEVTLVETHA NLRVLTRWRP  240
RQLFKMVVGF QTLHLSILHL NVTTTLDSLV LYSFSAKVEE GCHLTSVDDI AGAVHHMLRI  300
IDEEATLA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187RRKRRRK
28286RKRRR
3101112RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240870.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ9C7T45e-68BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1U7Z1860.0A0A1U7Z186_NELNU; transcription factor bHLH71-like
STRINGXP_010240870.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]