PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021831-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-YC
Protein Properties Length: 311aa    MW: 35727.8 Da    PI: 6.4145
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021831-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC146.27.2e-46631652101
          NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 
                    l+ fw++q   i++ t++k+h+lPlarik+++kadedvkmisa++Pvl++kacelfileltlrsw +ae+ krr l++sdia avt++++ dfl+d
  NNU_021831-RA  63 LRLFWQQQlfeINQITEIKQHQLPLARIKRVMKADEDVKMISADTPVLFAKACELFILELTLRSWFRAEDGKRRVLQRSDIAHAVTHSEVLDFLLD 158
                    899*****99999*********************************************************************************** PP

          NF-YC  95 ivprdel 101
                    ivp++e 
  NNU_021831-RA 159 IVPTEEA 165
                    ***9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.19E-2670156IPR009072Histone-fold
PfamPF008082.6E-1784147IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.5E-3285161IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEFNNQSLQF NAAPTASPFM PLQHNFMQMQ VPPRLLPRNP QDPHQMEGEG IEFTLEELRR  60
QNLRLFWQQQ LFEINQITEI KQHQLPLARI KRVMKADEDV KMISADTPVL FAKACELFIL  120
ELTLRSWFRA EDGKRRVLQR SDIAHAVTHS EVLDFLLDIV PTEEAEAKED KSEKAEKTEK  180
TEGGIQILPY NNEVNFPMMD VNQFHQNFIG DLMAAEQIPQ NFVFQQPSPS TQFIYEPSPQ  240
VNSEQSIAKV VIEYANKLRY KYGSTMELVM GPKDFEVHPG ARVSGNVGRK RVLVGNKRSS  300
IALGQKNRGM S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-3870161394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279434.14e-79PREDICTED: nuclear transcription factor Y subunit C-2-like
TrEMBLA0A1U8BD651e-77A0A1U8BD65_NELNU; nuclear transcription factor Y subunit C-2-like
STRINGXP_010279434.12e-78(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.28e-44nuclear factor Y, subunit C4