PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021571-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Dof
Protein Properties Length: 160aa    MW: 17502.8 Da    PI: 10.1746
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021571-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-3944103261
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                    +ek+++cprC+s++tkfCy+nny+++qPr+fCkaC+ryWt+GG+lrnvP+G+grrknk  
  NNU_021571-RA  44 AEKTIPCPRCKSMDTKFCYFNNYNVNQPRHFCKACQRYWTAGGTLRNVPIGAGRRKNKPP 103
                    57899****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2642101IPR003851Zinc finger, Dof-type
PfamPF027012.0E-3246101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.46348102IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105086IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1902455Biological Processnegative regulation of stem cell population maintenance
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MADVDSSGGG APGIKLFGTT IAPQVKGVEV KKPAKADDTN EKRAEKTIPC PRCKSMDTKF  60
CYFNNYNVNQ PRHFCKACQR YWTAGGTLRN VPIGAGRRKN KPPSQGTIGF PNNCVFDASG  120
VNQFDFEGVM EQWSIATARG GFRQVFPSKR RSNTSSGQIC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279119.11e-116PREDICTED: dof zinc finger protein DOF1.5-like
SwissprotO229679e-51CDF4_ARATH; Cyclic dof factor 4
TrEMBLA0A1U8BCF71e-115A0A1U8BCF7_NELNU; dof zinc finger protein DOF1.5-like
STRINGXP_010279119.11e-116(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34140.14e-53Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Bueso E, et al.
    Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration.
    Plant J., 2016. 87(6): p. 583-96
    [PMID:27227784]