PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021532-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 146aa    MW: 16575.5 Da    PI: 9.6565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021532-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-1862112155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++++ Vr+++ +g+W+AeIrdp     r  r +lg+++taeeAak +++a+ +l+g
  NNU_021532-RA  62 KKFRRVRQRP-WGKWAAEIRDPA----RgVRLWLGTYDTAEEAAKVYDNAAIQLRG 112
                    58999*****.**********82....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.2E-331139IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.46E-3062119No hitNo description
SuperFamilySSF541713.33E-2063120IPR016177DNA-binding domain
SMARTSM003805.0E-3563126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-2963120IPR001471AP2/ERF domain
PROSITE profilePS5103222.68263120IPR001471AP2/ERF domain
PRINTSPR003672.1E-96475IPR001471AP2/ERF domain
PfamPF008473.7E-1165112IPR001471AP2/ERF domain
PRINTSPR003672.1E-986102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MRHRNNSSEA NATDKPKVVR ISFIDADATD SSSDEDELFG RHIVKSIQSN RRPLNLSSSN  60
GKKFRRVRQR PWGKWAAEIR DPARGVRLWL GTYDTAEEAA KVYDNAAIQL RGPDAMTNFT  120
TPPKAKQEIQ VPTSSGYDSF YCYLCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2159119162ATERF1
3gcc_A3e-2159119162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251534.12e-82PREDICTED: ethylene-responsive transcription factor CRF3
SwissprotQ9SUE39e-36CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1U7ZRV65e-81A0A1U7ZRV6_NELNU; ethylene-responsive transcription factor CRF3
STRINGXP_010251534.19e-82(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-33cytokinin response factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]