PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_021257-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 383aa MW: 42774.8 Da PI: 5.3926 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.6 | 8e-15 | 73 | 120 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+++ G g+W+ +ar g+ R++k+c++rw +yl NNU_021257-RA 73 KGLWSPEEDDKLINYMLSNGQGCWSDVARNAGLQRCGKSCRLRWINYL 120 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.6e-16 | 126 | 169 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++ NNU_021257-RA 126 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 169 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.464 | 68 | 120 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.77E-28 | 71 | 167 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-11 | 72 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 73 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 74 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.40E-9 | 76 | 120 | No hit | No description |
PROSITE profile | PS51294 | 25.918 | 121 | 175 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-16 | 125 | 173 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 126 | 169 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-26 | 128 | 176 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.83E-11 | 128 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MHLCLCASLY QSTFLCLSLS FFYLSPSYKI FSPLLQIQLR EQGLQGTLYC KQEMRKPDPL 60 GKKNNNIPNK LRKGLWSPEE DDKLINYMLS NGQGCWSDVA RNAGLQRCGK SCRLRWINYL 120 RPDLKRGAFS PQEEELIIHL HSLLGNRWSQ IAARLPGRTD NEIKNFWNST IKKRLKNSSS 180 SSTPSPNNSD SSEHRDVMGG LMPMSEQDIM AWCMDSSSSS SPSMLAMAMS NQFQTLPPLD 240 NSYDMSATAG YFNNASQCFT QVGVGDSFYG DHGIFGGGDD MGVGVGGELF VPPLESIGLE 300 NSTVTDSDIH KKIPNYTNND HYFSNIDSII NHCNNSSSSS NKIEXLIGVG SYWEGQNLRM 360 GEWDLGDLMG DVSSYPFLDF QVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 67 | 175 | 2 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00336 | DAP | Transfer from AT3G08500 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278997.1 | 0.0 | PREDICTED: transcription factor MYB46-like | ||||
TrEMBL | A0A1U8BPA0 | 0.0 | A0A1U8BPA0_NELNU; transcription factor MYB46-like | ||||
STRING | XP_010278997.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 1e-60 | myb domain protein 46 |