PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_021176-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 20161.5 Da PI: 4.6183 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.7 | 4.4e-16 | 22 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+Wv+eIr+p++ ++r++lg+f t+e+Aa a++ a+++l+g NNU_021176-RA 22 IYRGIR-CR-SGKWVSEIREPRK---STRIWLGTFPTPEMAATAYDVAALALKG 70 69***9.55.6*********843...5************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.10E-30 | 21 | 80 | No hit | No description |
Pfam | PF00847 | 1.3E-9 | 21 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-27 | 22 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-31 | 22 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-18 | 22 | 79 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.389 | 22 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-7 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-7 | 60 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MIVTSSAPGA SSHQPVAGKH PIYRGIRCRS GKWVSEIREP RKSTRIWLGT FPTPEMAATA 60 YDVAALALKG SDAVLNFPET VSSYPIPASA SPSDIRAAAA AAAASRLPKT ESIDDQPFSH 120 LGNVELDTDS NPPTSREEFI DEEALFDMPK LLVNMAEGML LSPPRMNPRT SDDSPENSDG 180 ESLWSYT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-15 | 18 | 83 | 3 | 68 | ATERF1 |
3gcc_A | 1e-15 | 18 | 83 | 3 | 68 | ATERF1 |
5wx9_A | 3e-15 | 14 | 82 | 6 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278525.1 | 1e-135 | PREDICTED: ethylene-responsive transcription factor ERF026-like | ||||
Swissprot | Q9FJ90 | 5e-54 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A1U8BN80 | 1e-133 | A0A1U8BN80_NELNU; ethylene-responsive transcription factor ERF026-like | ||||
STRING | XP_010278525.1 | 1e-134 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-44 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|