PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021046-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 359aa MW: 39557.2 Da PI: 9.3183

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021046-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.3	3.5e-54	20	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ NNU_021046-RA 20 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-TIIAEVDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSg 114 79**************************.89***********8888999**********************************997 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy gr pkg+kt+W+mheyrl NNU_021046-RA 115 GTQKVGVKKALVFYGGRPPKGVKTNWIMHEYRL 147 7788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-65	13	181	IPR003441	NAC domain
PROSITE profile	PS51005	62.663	20	181	IPR003441	NAC domain
Pfam	PF02365	3.2E-28	21	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MESTDSSSGS QQHQQQQPRL PPGFRFHPTD EELVVHYLKK KASSAPLPVT IIAEVDLYKF 60 DPWELPGKAT FGEQEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPI LTSGGTQKVG 120 VKKALVFYGG RPPKGVKTNW IMHEYRLADN STSSKPPGVD VSNKKSSLRL DDWVLCRIYK 180 KNNSNRLMER DKEDSMTDMM ALPTSTVEGQ QSSKQPPAQR TTNYGGMLLE SDDNFFEGLL 240 SEDGVNSSSL PQFGSSSIST TELSMFPAAT ATQLPLKRPF PSPYFNEVAA IGPSSSTKKF 300 HPDHNSSGSG STNANNPIAT LLNQLPQAAT PFHNHTLLGS LGEGVLRQPY QLSGINWNP

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MESTDSSSGS QQHQQQQPRL PPGFRFHPTD EELVVHYLKK KASSAPLPVT IIAEVDLYKF  60
DPWELPGKAT FGEQEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPI LTSGGTQKVG  120
VKKALVFYGG RPPKGVKTNW IMHEYRLADN STSSKPPGVD VSNKKSSLRL DDWVLCRIYK  180
KNNSNRLMER DKEDSMTDMM ALPTSTVEGQ QSSKQPPAQR TTNYGGMLLE SDDNFFEGLL  240
SEDGVNSSSL PQFGSSSIST TELSMFPAAT ATQLPLKRPF PSPYFNEVAA IGPSSSTKKF  300
HPDHNSSGSG STNANNPIAT LLNQLPQAAT PFHNHTLLGS LGEGVLRQPY QLSGINWNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-75	17	184	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-75	17	184	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-75	17	184	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-75	17	184	14	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-75	17	184	17	171	NAC domain-containing protein 19
3swm_B	1e-75	17	184	17	171	NAC domain-containing protein 19
3swm_C	1e-75	17	184	17	171	NAC domain-containing protein 19
3swm_D	1e-75	17	184	17	171	NAC domain-containing protein 19
3swp_A	1e-75	17	184	17	171	NAC domain-containing protein 19
3swp_B	1e-75	17	184	17	171	NAC domain-containing protein 19
3swp_C	1e-75	17	184	17	171	NAC domain-containing protein 19
3swp_D	1e-75	17	184	17	171	NAC domain-containing protein 19
4dul_A	1e-75	17	184	14	168	NAC domain-containing protein 19
4dul_B	1e-75	17	184	14	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278293.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	A0SPJ9	1e-114	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A1U8BLV1	0.0	A0A1U8BLV1_NELNU; NAC transcription factor 56-like
STRING	XP_010278293.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-109	NAC domain containing protein 2

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]