PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021022-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 494aa    MW: 56200.5 Da    PI: 6.4448
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021022-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.96.3e-24114215186
       trihelix   1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                    +Wt+++v++Li ++ +++++ +++                +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +
  NNU_021022-RA 114 KWTDNMVRLLIMVVFYIGDDGGSEGndpsgagkkkpggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVVENQS 209
                    7***************999999643367788889999999**********************************************55******** PP

       trihelix  81 yfdqle 86 
                    +++ ++
  NNU_021022-RA 210 LLETMD 215
                    **9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-21112241No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MDVNSMAGRM MSGMAPGMLG LEMPLHQPQQ QQHHPHQQLQ QQQQHHHHHQ MMAFAGHDND  60
HHSQVQSVKQ HGYAYATKGK PQQPALSDEE EQGLVGDDGG ADARKRMSPW QRMKWTDNMV  120
RLLIMVVFYI GDDGGSEGND PSGAGKKKPG GLLQKKGKWK SVSRAMMEKG FYVSPQQCED  180
KFNDLNKRYK RVNDILGKGT ACKVVENQSL LETMDQLSPK MKEEVRKLLN SKHLFFREMC  240
AYHNSCGGGV GGAHHASEAA LESENHQQQQ HCFHSPEGTA AAAGNPRSLS RSECEGLKLR  300
SREEEEDDDG EDDDDDDDDG DEDEDDEDES MEIGGRSRNN EHGGGGGHEE EDDNELKLAS  360
RKKLRKGMPA ASLSPSPSIQ HLNSEMMGVL QDGTKSSWDQ RQWMRNKSLQ LEEQRVSYQC  420
QAFGLEKQRL KWIKFSGKKE REMERMKLKN ERMRLENERM LLLLREKELE LLNLRQKQQQ  480
QQQHSSNKRP DQSG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278270.10.0PREDICTED: putative DNA helicase INO80
TrEMBLA0A1U8BAD60.0A0A1U8BAD6_NELNU; putative DNA helicase INO80
STRINGXP_010278270.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-69sequence-specific DNA binding transcription factors