PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021019-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 597aa    MW: 64710.6 Da    PI: 8.171
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021019-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.86e-18216304186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W+++ + +L++a++e+  +l+rg+l++ +Weevs+ +     +++  +s +qCk+k +nl+kryk ++++++++   s+s++p+f+++e
  NNU_021019-RA 216 EWSDSAIDCLLDAYTEKFVQLNRGNLRGRDWEEVSSIVsdrcDKTKSFKSVEQCKNKVDNLKKRYKVERHRMSSG-GSSVSHWPWFKKME 304
                    5*********************************998887777888889*************************9.55666********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.3E-21214306No hitNo description
Gene3DG3DSA:3.40.1160.101.1E-73351590IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.834355591IPR015963Uridylate kinase, bacteria
SuperFamilySSF536332.88E-58356590IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.05E-126358591No hitNo description
PfamPF006965.9E-25359570IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MSLAANVVYL PFRLPASKTL TLIFFRRPRP SSLSLSLMAS CEDDFSLLGE DNPTPHHHQS  60
FASHRFAAKS TAIHSHAQAP SSQPHPLNTL AAASGAGSPK KVGGATAGDE EDEAEDYSDA  120
AFCSQANSKC APPPPFHDVN PNCFAAGDDA NPFAAEDESD PNKARANDVR NEKRKDREEL  180
SDGGTPYSFK KQKSGGGSGS GTGTSGGGDY RKDREEWSDS AIDCLLDAYT EKFVQLNRGN  240
LRGRDWEEVS SIVSDRCDKT KSFKSVEQCK NKVDNLKKRY KVERHRMSSG GSSVSHWPWF  300
KKMEQIVGNS SKVLTDEDRS AGASTSMLRQ SKRYVSTPSP VGLANNLKSK SLSSPRWRRV  360
VFKVSGAALA GNSPQNTDPK VIMLIAREVS MACRLGVEVA IVVGGRNFFC GDTWVTATGL  420
DRSTAYQIGM MATVMNSILL QSALEKLGVQ TRIQTAFPVQ EVAEPYNRKR AVRHLEKGRV  480
VIFGGIGAGT GNPLFTTDTA AALRASEVNA EAVLKGTNVD VVYDCHSRNN NNVAFEHISF  540
RELASRGITS MDMMAITFCE ENGIPVVVFN LHEPGNISRA LCGDQVGTLI DQTGRIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-633495901239Uridylate kinase
3ek5_B2e-633495901239Uridylate kinase
3ek5_C2e-633495901239Uridylate kinase
3ek5_D2e-633495901239Uridylate kinase
3ek5_E2e-633495901239Uridylate kinase
3ek5_F2e-633495901239Uridylate kinase
3ek6_A2e-633495901239Uridylate kinase
3ek6_B2e-633495901239Uridylate kinase
3ek6_C2e-633495901239Uridylate kinase
3ek6_D2e-633495901239Uridylate kinase
3ek6_E2e-633495901239Uridylate kinase
3ek6_F2e-633495901239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278264.10.0PREDICTED: uncharacterized protein LOC104612522 isoform X1
TrEMBLA0A1U8BE740.0A0A1U8BE74_NELNU; uncharacterized protein LOC104612522 isoform X1
STRINGXP_010278264.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein