PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_020783-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30786.2 Da PI: 5.4046 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l ++k++G +W+ +r g+ R++k+c++rw +yl NNU_020783-RA 14 KGTWTPEEDMKLTAYIKRYGHWNWRELPRFAGLARCGKSCRLRWVNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.4e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eEde++ + ++ lG++ W++Ia +++ gRt++++k++w++ NNU_020783-RA 67 RGHFSPEEDEIIMKMHASLGNR-WTRIATKLP-GRTDNEIKNHWHTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.038 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.54E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.27E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.41 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.68E-11 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MAKTGYCEKT GLKKGTWTPE EDMKLTAYIK RYGHWNWREL PRFAGLARCG KSCRLRWVNY 60 LRPDIKRGHF SPEEDEIIMK MHASLGNRWT RIATKLPGRT DNEIKNHWHT NLKKRLNREP 120 TTASSNDKMH HNEELSECKS EGNNNTKESE PGTCLSDDPM DEIRSSPSTS QQSFGDLSSP 180 SIDYSSVITD TNWSKAADNV ASPENFAEPV CSFWTEPLLA GNSYIHEDFL ETTADPLMFP 240 LSLISFGDPF CGYEGFYNDD NFDVFNQLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 12 | 117 | 5 | 109 | B-MYB |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010277888.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | A0A1U8B9M2 | 0.0 | A0A1U8B9M2_NELNU; myb-related protein 308-like | ||||
STRING | XP_010277888.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 6e-61 | myb domain protein 14 |