PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_020671-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | TCP | ||||||||
Protein Properties | Length: 590aa MW: 65209.7 Da PI: 6.4148 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.1 | 9.2e-36 | 222 | 339 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasn 84 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ ++ +++++ +++++ NNU_020671-RA 222 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELppwhptatntnttTT------KPVEQTNEDDE 311 79**************************************************************887765443332211......22222222222 PP TCP 85 sssg..........................k 89 + + NNU_020671-RA 312 ---NrlrlrhqadnlglgsskrpmaneqapS 339 ...1222433333355655544443333221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.9E-33 | 222 | 324 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.295 | 224 | 282 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MDGRRIMESD GLLGEAAVSS FRVVAAAEEA EQQATRTTRE LGEDAKQVQN PVIKSARNQK 60 LEDENKKSLS LDPQRNQQLH IRRHLHQALK TRLEEDDDDD VEEEEEEDQD QSEEEHQRPQ 120 PPPPLPPQQQ GFHGYHHHQQ LFGILDGEAI DTQIDHQSQP PKKRSFFPSS SPPSSARGIE 180 YAGFGERMGE NHHNQQSSRL GLRSAGGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR 240 RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LIKKAKAAID ELAELPPWHP TATNTNTTTT 300 KPVEQTNEDD ENRLRLRHQA DNLGLGSSKR PMANEQAPSG FAFQQQLSSN PSQSSSFLPP 360 SMDSDAIADT IKSFFPMAAA AAAAPSSSSI HFQNYPPDLL SRTSNQTQDL RLSLQSFQDP 420 MLLHHQQTHQ HPAPSPSPEQ ALFSVSAPLA FDATSTNWSE QQPPPEMGRF QRMIAWNADN 480 ETSSGGGSGV GGFVFHSPAP LQSLFGQNPL FSQRGPLQSS NSPSVRAWTD PQVAAADHHN 540 TAAIHSSSIS GIGFASGGFS GFRIPARIQG LNIFYRGVKK MQNEYETRKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 229 | 282 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 229 | 282 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010277724.1 | 0.0 | PREDICTED: transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-105 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A1U8B973 | 0.0 | A0A1U8B973_NELNU; transcription factor TCP4 | ||||
STRING | XP_010277724.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-81 | TCP family protein |