PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020582-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 464aa    MW: 51630.9 Da    PI: 5.7425
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020582-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA451.5e-14260293132
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                    C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ 
  NNU_020582-RA 260 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWAN 293
                    *****99999**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513209.78168103IPR010399Tify domain
PfamPF062001.1E-67194IPR010399Tify domain
PfamPF062033.9E-14182223IPR010402CCT domain
PROSITE profilePS5101712.739182224IPR010402CCT domain
SMARTSM004013.5E-6254307IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-8257294No hitNo description
Gene3DG3DSA:3.30.50.102.4E-12258294IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.71E-11259294No hitNo description
PfamPF003201.8E-12260294IPR000679Zinc finger, GATA-type
PROSITE patternPS003440260287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MASVNPQPLQ SIPPYEGHED RFQIPIQIDD DGGGYEADGI DAVGDEAMDD VDDVHVNSGN  60
RVDQTYGLAS RTSELTLSFE GEVYVFHAVT PEKASLYSLS LRFDYNVFTG VGNPRAFSEL  120
DMFFAFISYF KYRFSYVNNP VQAVLLLLGG CDIPAGVSSI EVPYQNNRGV VEGPRRSNLS  180
RRIASLVRFR EKRKERNFDK KIRYTVRKEV AQRMHRKNGQ FASLKENYKE GLPASGSWDP  240
AQGCPQDDGT PRPEIVLRKC QHCGISEKST PAMRRGPAGP RSLCNACGLM WANKVGIAFI  300
ALSTFHVFYL DQLFGKLIHF NAGDTEFSKQ LKQYRKYVLT SLLDLQGTLR DLSKGGRSVS  360
FDQNEPGTPC ETKVSTMEAS NPSANRDGQQ GTLEDFPKTI VGSENSLVNQ NVQGSPEESK  420
PLPLEFGNPS INQVEQPEMG SDGQPPANYI EPQVYVCYLT WTRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019055728.10.0PREDICTED: GATA transcription factor 28-like isoform X2
TrEMBLA0A1U8QAB70.0A0A1U8QAB7_NELNU; GATA transcription factor 28-like isoform X2
STRINGXP_010277541.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-57ZIM-LIKE 2