PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020581-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 306aa    MW: 33882.1 Da    PI: 7.3075
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020581-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.47.3e-17219253133
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                    C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ k
  NNU_020581-RA 219 CQHCGTSSksTPMMRRGPAGPRTLCNACGLMWANK 253
                    ********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.9E-1085120IPR010399Tify domain
PROSITE profilePS5132014.00585120IPR010399Tify domain
PfamPF062005.3E-1291119IPR010399Tify domain
PfamPF062034.3E-16151193IPR010402CCT domain
PROSITE profilePS5101713.037151193IPR010402CCT domain
SMARTSM004013.5E-7213265IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-10214253No hitNo description
Gene3DG3DSA:3.30.50.104.8E-14217253IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.98E-13218265No hitNo description
PfamPF003202.1E-14219253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440219246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MPETNSQSQM YGRANRMQSM NVPNRIEAED GSAGGESIDN PHIRYEAHTL EDGGVGSTVE  60
VMDAVEEVPT DSAFLSTANF VLPSRGEGMD QLTLSFQGEV YVFDAVSPEK VQAVLLLLGG  120
YEVPSAMPGL AASQPQKGLV DYPRRSSLPQ RVASLNRFRE KRKERCFDKK IRYNVRKEVA  180
LRMQRKKGQF TSSKVSSDEM GSSSCTPGGQ DEPQRETICQ HCGTSSKSTP MMRRGPAGPR  240
TLCNACGLMW ANKVGMSIDV DQYDPLTSEA GNDSRRTVDE DSIDIRSGRV RIRKKRANME  300
EMEIRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277540.10.0PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL74e-77GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1U8BCH30.0A0A1U8BCH3_NELNU; GATA transcription factor 24-like
STRINGXP_010277540.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-80ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]