PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020462-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 434aa    MW: 48077.9 Da    PI: 5.0328
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020462-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.39.9e-92334312373
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsevsPilk 92 
                    ++lL++cA+a++s+d++laq++L+ l+++a pdgd+ qRl+  f++AL ar a+++s +   l++ +t++ n    ++++++ +l  f++++P+++
  NNU_020462-RA  33 EQLLVHCANAIDSNDATLAQQILWVLNNIAPPDGDSSQRLTCGFLRALIARAAKTGSCT--MLTAMATAQVNlplNVHKFSVIELasFVDLTPWHR 126
                    79****************************************************44433..34444444344344666666666678********* PP

           GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.... 181
                    f++ +aN aIlea+eg + vHiiD++ ++++Q p+L++++a+R+egpp +++T+ g+ + +      ++ee+g++L +fA++ +v +ef+v+    
  NNU_020462-RA 127 FGFTAANAAILEAIEGFSVVHIIDLSSTHCMQIPTLIDSIANRSEGPPLIKLTVAGATTDVpplLDLSYEELGSKLVNFARSRNVGMEFRVIpsss 222
                    *********************************************************88779988999***********************97763 PP

           GRAS 182 ...vakrledleleeLrvkp..........gEalaVnlvlqlhrll..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                            ++l +e+Lr  +          gEal++n++++lh+++           es s++s r+ +L +++sl+P++vv+v+++ad +s++++
  NNU_020462-RA 223 sdgF----ASL-VEQLRAVQqlilangggeGEALVINCHMMLHYIPeetlgvtpycFESSSTSSLRTMFLTAIRSLEPTIVVLVDEDADFTSNNLV 313
                    3332....333.444443333444449999****************99999999997777888889****************************** PP

           GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                     r+ +a++y +  +d++++ +p+ s++++++E+  l ++i+n++a+eg +r+er e +++W +r+++a F+ +++se+++ ++k++l +++ ++g 
  NNU_020462-RA 314 CRLRSAFDYLWIPYDTMDTFFPKGSKQKQWYEAD-LCWKIENLIAQEGVQRVERLEPKSRWIQRMQSANFRGIQFSEETVLEVKSMLDEHAaGWGL 408
                    **********************************.99******************************************************55554 PP

           GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373
                    +  ee++ lvl+Wk++++v+ +aW
  NNU_020462-RA 409 KK-EEDEGLVLTWKGHNVVFSTAW 431
                    43.5577899************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.4896412IPR005202Transcription factor GRAS
PfamPF035143.4E-8933431IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSNNVNPFHR TRPWPGFLTS KTLGSFGDAN CMEQLLVHCA NAIDSNDATL AQQILWVLNN  60
IAPPDGDSSQ RLTCGFLRAL IARAAKTGSC TMLTAMATAQ VNLPLNVHKF SVIELASFVD  120
LTPWHRFGFT AANAAILEAI EGFSVVHIID LSSTHCMQIP TLIDSIANRS EGPPLIKLTV  180
AGATTDVPPL LDLSYEELGS KLVNFARSRN VGMEFRVIPS SSSDGFASLV EQLRAVQQLI  240
LANGGGEGEA LVINCHMMLH YIPEETLGVT PYCFESSSTS SLRTMFLTAI RSLEPTIVVL  300
VDEDADFTSN NLVCRLRSAF DYLWIPYDTM DTFFPKGSKQ KQWYEADLCW KIENLIAQEG  360
VQRVERLEPK SRWIQRMQSA NFRGIQFSEE TVLEVKSMLD EHAAGWGLKK EEDEGLVLTW  420
KGHNVVFSTA WVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B8e-492743328420Protein SHORT-ROOT
5b3h_E8e-492743328420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277081.10.0PREDICTED: scarecrow-like protein 32 isoform X2
SwissprotQ9SN221e-180SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1U8BJU30.0A0A1U8BJU3_NELNU; scarecrow-like protein 32 isoform X2
STRINGXP_010277081.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein