PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_020458-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25239.7 Da PI: 8.407 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 102.8 | 3.1e-32 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q++ NNU_020458-RA 2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFITAVPENQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHVCQTA 97 6*********************************************************************************************** PP DUF260 92 aelall 97 +e++l+ NNU_020458-RA 98 VETVLR 103 998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.797 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-27 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FITAVPENQR 60 PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WHVCQTAVET VLRGGTLRPM TDVVAGILSH 120 DSDETSEVEV ACTNTKKQQR QDLYSRSRTS SKRRGFDEVA GLNLQPGNLD LSLMPGFPKR 180 VAAGGRGVGG MVEKRRPGSP SMNSEESVTT SFDSGAAAGD QMRSGEPKLL NLFL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010277076.1 | 1e-174 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 2e-81 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A1U8BJT9 | 1e-172 | A0A1U8BJT9_NELNU; LOB domain-containing protein 38-like | ||||
STRING | XP_010277076.1 | 1e-173 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 2e-83 | LOB domain-containing protein 39 |