PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_020270-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | B3 | ||||||||
Protein Properties | Length: 400aa MW: 45621.1 Da PI: 9.7439 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61 | 2e-19 | 17 | 108 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv+ l+s rl +p f+++++g+ + l+ +sg+sW +l ++++ +l++GWk F k++ +++gDf+vF++dg+ f v+v NNU_020270-RA 17 FFKVF--LPELSSERLKIPLAFLKHMKGQAS--GAVWLKGPSGNSWHANL--ISNPDGLFLEDGWKAFLKDHLIQVGDFLVFRYDGNLHF--SVQV 104 88999..8899999*********87788844..48***************..999999**************************997777..9999 PP E-SS CS B3 97 frks 100 f++s NNU_020270-RA 105 FDRS 108 9985 PP | |||||||
2 | B3 | 47.7 | 2.9e-15 | 304 | 397 | 2 | 98 |
EEE-..-HHHHT....T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlks....grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 k +++ +v k+ ++ + fa+eh +++++ ++l++ s+ W v+l ++s+r+++++GW++Fv++ +kegD++vF+l+ + e NNU_020270-RA 304 AKFMKSTYVCKKdsllCMQPIAGCFAREHlPHDENG---IILRT-SNGAWIVEL--VQHSKRHFFGSGWRKFVRDSTIKEGDVCVFELVA--KIEI 391 566666666666333344478888999996444333...77666.6779*****..*******************************986..6778 PP EEEEE- CS B3 93 vvkvfr 98 +v++fr NNU_020270-RA 392 HVHIFR 397 999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.9E-25 | 12 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-24 | 13 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.64E-20 | 15 | 106 | No hit | No description |
PROSITE profile | PS50863 | 13.563 | 15 | 108 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-15 | 17 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-17 | 17 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-20 | 295 | 397 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-20 | 296 | 397 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.62E-14 | 301 | 397 | No hit | No description |
SMART | SM01019 | 3.1E-4 | 303 | 399 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.773 | 303 | 399 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-13 | 303 | 398 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MAESVRVCSE TGRRPCFFKV FLPELSSERL KIPLAFLKHM KGQASGAVWL KGPSGNSWHA 60 NLISNPDGLF LEDGWKAFLK DHLIQVGDFL VFRYDGNLHF SVQVFDRSAC EKEVAFDVKS 120 NLGKDNNSFA EREEKKKTGE EKTTDVLGAS SPSPFEAAAL KRKRVDDDPP QAAQENFESK 180 NDDENAFDKR FCGRKDATRT SERKESAPLS SKRKEGGRAP RNSSRLMYLS QTNACEHEPD 240 ERLPSEKQSK PSKLGREMMK GKKWKEMGIL HRQCCFSRRF TTEKERKELF KALKSFTSGF 300 PYFAKFMKST YVCKKDSLLC MQPIAGCFAR EHLPHDENGI ILRTSNGAWI VELVQHSKRH 360 FFGSGWRKFV RDSTIKEGDV CVFELVAKIE IHVHIFRGGK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019055699.1 | 0.0 | PREDICTED: uncharacterized protein LOC104611728 | ||||
TrEMBL | A0A1U8QA84 | 0.0 | A0A1U8QA84_NELNU; uncharacterized protein LOC104611728 | ||||
STRING | XP_010277224.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-27 | B3 family protein |