PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020217-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 282aa    MW: 31864.1 Da    PI: 10.0706
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020217-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.91.7e-1526116186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W+++ + +Liea  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ l+k+yk +k++      + +s++p++ +l+
  NNU_020217-RA  26 CWSEEATYTLIEAWGDRYIELNRGNLRQKHWQEVADAVnarhgAIKKNRRTDVQCKNRIDTLKKKYKIEKARILASDGTLTSSWPFYYRLD 116
                    7*************************************975554555688********************9988877777889****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-2624118No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDGSEAPTTT AQARPSHNPL PFREDCWSEE ATYTLIEAWG DRYIELNRGN LRQKHWQEVA  60
DAVNARHGAI KKNRRTDVQC KNRIDTLKKK YKIEKARILA SDGTLTSSWP FYYRLDALIG  120
STVPAKKPSP PLALPLPYRK TPPSLPHASP VPVAVRSAKE KRPSPAVDDS FFRRNYSAVA  180
AAAAAAENDA DSESSRSSTE SRRRDGEADG FRQLAQAITR FGEIYERVEG AKQRQMIELE  240
KQRMQFAKDL EFQRMQLFMD TQVQLEKIKR AKRAAAAGEC IL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277022.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A1U8B7L00.0A0A1U8B7L0_NELNU; trihelix transcription factor ASIL2
STRINGXP_010277022.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-68sequence-specific DNA binding transcription factors