PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019930-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 349aa    MW: 38815.4 Da    PI: 7.2877
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019930-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.36.9e-16219253133
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                    C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ k
  NNU_019930-RA 219 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANK 253
                    *****99999**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.10675110IPR010399Tify domain
SMARTSM009791.3E-1075110IPR010399Tify domain
PfamPF062002.1E-1279109IPR010399Tify domain
PfamPF062037.9E-16143185IPR010402CCT domain
PROSITE profilePS5101713.205143185IPR010402CCT domain
SMARTSM004011.2E-7213266IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-10214264No hitNo description
Gene3DG3DSA:3.30.50.109.3E-13217258IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.05E-11218269No hitNo description
PfamPF003208.7E-14219253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440219246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MIDSVHGSAP QIHVAEGQHM QMHYMQEHEQ ALHHNSNGSG MEDDQDDGAG SEGMEADVPS  60
DHGALSDPHG SMPPRSHGGN QLTLSFQGEV YVFDSVSAEK VQAVLLLLGG REVPASVPPL  120
PITTHHNNRG LSDVPQRLNV PQRLASLIRF REKRKERNFD KKIRYTVRKE VALRMQRNKG  180
QFTSSKSTNY DYVPPITSSD PNQHLSTESN GAQQKETACR HCGISEKSTP MMRRGPEGPR  240
TLCNACGLMW ANKVLRKPHC CKLLIGYRRL EKLGVRAKKR KRVMIEGLLE DLKRNEPEED  300
VNEEGTLRDL SKTGPLPPAH NPSSNQNENG DAEADQLLIQ NAPHDNDSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276694.10.0PREDICTED: GATA transcription factor 28 isoform X1
SwissprotQ8H1G01e-103GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A1U8BAE90.0A0A1U8BAE9_NELNU; GATA transcription factor 28 isoform X1
STRINGXP_010276694.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-106ZIM-LIKE 2