PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_019848-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 383aa MW: 43408 Da PI: 8.3803

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019848-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.3	1.2e-52	8	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeel+ +yL++k++++ ++ + i+evdiyk++PwdLp+k++ ++kewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ NNU_019848-RA 8 LPPGFRFHPTDEELILHYLRNKATSSLYPV-SLIAEVDIYKFDPWDLPAKAAFGDKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPIVAIs 102 79***********************999.88***********988899**********************************9877 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g+kk Lvfykgr pkg kt+W+mheyrl NNU_019848-RA 103 rsgRKENIGVKKALVFYKGRPPKGIKTNWIMHEYRL 138 8888888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.94E-62	6	174	IPR003441	NAC domain
PROSITE profile	PS51005	60.359	8	174	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	9	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MPNLESTLPP GFRFHPTDEE LILHYLRNKA TSSLYPVSLI AEVDIYKFDP WDLPAKAAFG 60 DKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKPIVA ISRSGRKENI GVKKALVFYK 120 GRPPKGIKTN WIMHEYRLAA AEIHPNNYNN NPTKLIKHSS MRLDDWVLCR IYNKSNSPSN 180 TSRIGDGEEE NILIKDLLIL PSLPNHESKN TISSNPLRSS SSNLLEDMDY SFLNCLLSDN 240 SSELNGSEHC PVLDHGNPAA AGILPLNNNT NNCGNHQHQK LPQMDPTSSL MESKMMRQCS 300 VAINMDDNML LYPTKKLAGD PCSFASSTNE LEYARYYHLH CHQQPLSLNQ QQLLFSSHLH 360 SQRQKEDKKG KHVNWNVNSC LNN

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MPNLESTLPP GFRFHPTDEE LILHYLRNKA TSSLYPVSLI AEVDIYKFDP WDLPAKAAFG  60
DKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKPIVA ISRSGRKENI GVKKALVFYK  120
GRPPKGIKTN WIMHEYRLAA AEIHPNNYNN NPTKLIKHSS MRLDDWVLCR IYNKSNSPSN  180
TSRIGDGEEE NILIKDLLIL PSLPNHESKN TISSNPLRSS SSNLLEDMDY SFLNCLLSDN  240
SSELNGSEHC PVLDHGNPAA AGILPLNNNT NNCGNHQHQK LPQMDPTSSL MESKMMRQCS  300
VAINMDDNML LYPTKKLAGD PCSFASSTNE LEYARYYHLH CHQQPLSLNQ QQLLFSSHLH  360
SQRQKEDKKG KHVNWNVNSC LNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-72	5	177	12	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00333	DAP	Transfer from AT3G04070	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276466.1	0.0	PREDICTED: NAC transcription factor 25-like isoform X1
Swissprot	Q84TD6	2e-91	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A1U8B658	0.0	A0A1U8B658_NELNU; NAC transcription factor 25-like isoform X1
STRING	XP_010276466.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	7e-87	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]