PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_019843-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 414aa MW: 46335.8 Da PI: 6.7339 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 185.7 | 1e-57 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdee++++yL kv+++++++ ++i +vd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke+++ k NNU_019843-RA 16 LPPGFRFHPTDEEIITHYLSMKVADSNFSA-RAIGDVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIYRGK 110 79**************************99.89***************99999*****************************************9* PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g lvg+kktLvfy+grapkgekt+Wvmheyrl NNU_019843-RA 111 GCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 142 ******************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.15E-64 | 13 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.467 | 16 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-29 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 414 aa Download sequence Send to blast |
MEEVAVLTKG EDCIDLPPGF RFHPTDEEII THYLSMKVAD SNFSARAIGD VDLNKCEPWD 60 LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATEAGYWKAT GKDKEIYRGK GCLVGMKKTL 120 VFYRGRAPKG EKTNWVMHEY RLDGKFSYYN LPKSAKDEWV VCRVFHKNTG VKKSPVVGLP 180 RTNSSVDDLL SSPQLPPLLD HVYLDTNGAS SSFMDGEDIF KGLATTSSSA MRAPDANHLP 240 SYIFSSGIND HLQQPPPQPQ QDQKCFLPPN YSNTNYQGNP SSYTLPTSMF YPQIPPSNPF 300 FSIQGTTNSG YLHQGKNNSI TGFTSSGFSE HDQAAILGAF ASSFDKSSRQ LMQCKVEQTS 360 NQSMVSHSQD TGLSNDITTE ISSVSKHELG RSYEDLERPP PDSPVGDLDS LWTY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-54 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-54 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-54 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-54 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-54 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-54 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-54 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-54 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-54 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-54 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-54 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-54 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-54 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-54 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010276452.1 | 0.0 | PREDICTED: NAC domain-containing protein 72-like | ||||
TrEMBL | A0A1U8BIE1 | 0.0 | A0A1U8BIE1_NELNU; NAC domain-containing protein 72-like | ||||
STRING | XP_010276452.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-105 | Arabidopsis NAC domain containing protein 87 |