PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_019785-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 314aa MW: 35363.6 Da PI: 8.0438 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 30 | 77 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell+ ++k+ G g+W+t +++ g+ R++k+c++rw +yl NNU_019785-RA 30 RGPWTPEEDELLASYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 77 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 5.8e-15 | 88 | 128 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l NNU_019785-RA 88 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 128 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-22 | 21 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.013 | 25 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.21E-28 | 27 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-13 | 29 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-16 | 30 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.18E-10 | 32 | 77 | No hit | No description |
PROSITE profile | PS51294 | 24.397 | 78 | 132 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 80 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-14 | 88 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.45E-11 | 88 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MRNPSSSAAV AAASSSTSKT PCCSKVGLKR GPWTPEEDEL LASYIKREGE GRWRTLPKRA 60 GLLRCGKSCR LRWMNYLRPS VKRGQIAPDE EDLILRLHRL LGNRWSLIAG RIPGRTDNEI 120 KNYWNTHLSK KLINQGIDPR THKPLNPNPN SSEENVHAAP PAPKLQPHPN PNPVPRLCSG 180 ATTPYKGKEC FREMSLDQDQ SREVGKDEEN WQNSDGFIIG NNHGEDNIDC CTDEVFSSFL 240 NSLINEDMFG NQQQHQQHQQ LQPNHHLIAP PDHLVSSAQA FGYGAIWESP LTSSTAAFSQ 300 DEHKRFVDHV DKRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 28 | 132 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010276363.1 | 0.0 | PREDICTED: transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 1e-87 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A1U8B619 | 0.0 | A0A1U8B619_NELNU; transcription repressor MYB5-like | ||||
STRING | XP_010276363.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 5e-80 | myb domain protein 5 |
Publications ? help Back to Top | |||
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