PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019622-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 319aa    MW: 36892.6 Da    PI: 7.9538
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019622-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.5e-54121411128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vik+vd++k+ePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++
  NNU_019622-RA  12 VPPGFRFHPTDEELLYYYLRKKVAYEVIDL-DVIKDVDLNKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIH 106
                    69****************************.9***************952444443456************************************* PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++ +g++ktLvfy+grap+g+ktdW+mheyrl
  NNU_019622-RA 107 LSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 141
                    *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-593162IPR003441NAC domain
PROSITE profilePS5100557.89212162IPR003441NAC domain
PfamPF023653.4E-2813141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MRMMPANGQV SVPPGFRFHP TDEELLYYYL RKKVAYEVID LDVIKDVDLN KLEPWDLKEK  60
CRIGSGPQNE WYFFSHKDKK YPTGTRTNRA TTAGFWKATG RDKAIHLSNS KRIGMRKTLV  120
FYTGRAPHGQ KTDWIMHEYR LDDENTELQQ EDGWVVCRVF KKKNHHRGFQ PEATREEENF  180
NYFKASGSLP LDPKQNFLTQ YDFTFDGSMH LPQLMSPESA VAPSFFPPIT FNTTDIECSH  240
NLMKLTSSGG GLLQHDQRIN GDWSFLDKLL ASHSHQSLDQ LYQQNKCSSS SQVFDVGTSS  300
QKFPFQYLGC ETDILKFSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-5061659171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275963.10.0PREDICTED: protein SOMBRERO isoform X2
SwissprotQ9MA171e-120SMB_ARATH; Protein SOMBRERO
TrEMBLA0A1U8B8K80.0A0A1U8B8K8_NELNU; protein SOMBRERO isoform X2
STRINGXP_010275962.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-100NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]