PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_019579-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

TCP

Protein Properties

Length: 452aa MW: 48726.3 Da PI: 7.2233

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019579-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.8	4.8e-39	74	231	2	135
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssasec.. 73 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ +++ + NNU_019579-RA 74 SGGKDRHSKVLTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnstfpdtpkqpsdekrpnasepRFNP---Aev 166 689***********************************************************99999998888777665544443333...133 PP TCP 74 .eaesssssasnsssgkaaksaakskksqksaasalnlak.esrakararare.rtrekmriknk 135 + + s ++++++++ + +++a+s+ s++s+ s+l+l++ esr kar+rare +ek r k+k NNU_019579-RA 167 eLETDPSYQQQQQQQHISLTKSACSSTSETSKGSVLSLSRsESRVKARERARErAAKEKEREKEK 231 555555566666666788899999999************************666677666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-41	75	226	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.577	76	134	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.829	207	225	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MEVDDIQPCK LSRIGNGRND TTKIGQKAGE QYQDEDDDDG EGRGGGCGSG GGGNDSGRLR 60 QWPASRIFRV SRASGGKDRH SKVLTAKGLR DRRVRLSVST AIQFYDLQDR LGYDQPSKAV 120 EWLIKAAADA IAELPSLNST FPDTPKQPSD EKRPNASEPR FNPAEVELET DPSYQQQQQQ 180 QHISLTKSAC SSTSETSKGS VLSLSRSESR VKARERARER AAKEKEREKE KEDTHAAHQQ 240 DVNHNSQSTS FTELLAAAAA ANDNGTSPTT SAQQNLGLSN FVLKPRHVPS SPMDYFGAGL 300 FGPASSRAHN SSGFSGQTHF GNPQQHSMAM QSPFSVTGDH PPELQQFSFL SDHLIPAAAA 360 AGNDYNLNFT ISSGLAGLNR GTLQSNSPSP LAHLQRFSSP VDGSNVPFFI GTAAPGAASV 420 ENHQFPAGFD ARLQLYYGDG CRHSDLKGKG KN

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MEVDDIQPCK LSRIGNGRND TTKIGQKAGE QYQDEDDDDG EGRGGGCGSG GGGNDSGRLR  60
QWPASRIFRV SRASGGKDRH SKVLTAKGLR DRRVRLSVST AIQFYDLQDR LGYDQPSKAV  120
EWLIKAAADA IAELPSLNST FPDTPKQPSD EKRPNASEPR FNPAEVELET DPSYQQQQQQ  180
QHISLTKSAC SSTSETSKGS VLSLSRSESR VKARERARER AAKEKEREKE KEDTHAAHQQ  240
DVNHNSQSTS FTELLAAAAA ANDNGTSPTT SAQQNLGLSN FVLKPRHVPS SPMDYFGAGL  300
FGPASSRAHN SSGFSGQTHF GNPQQHSMAM QSPFSVTGDH PPELQQFSFL SDHLIPAAAA  360
AGNDYNLNFT ISSGLAGLNR GTLQSNSPSP LAHLQRFSSP VDGSNVPFFI GTAAPGAASV  420
ENHQFPAGFD ARLQLYYGDG CRHSDLKGKG KN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-23	81	135	1	55	Putative transcription factor PCF6
5zkt_B	1e-23	81	135	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179, ECO:0000269\|PubMed:26596765}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:26596765}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010275881.1	0.0	PREDICTED: transcription factor TCP2
Refseq	XP_010275883.1	0.0	PREDICTED: transcription factor TCP2
Swissprot	Q93V43	5e-82	TCP2_ARATH; Transcription factor TCP2
TrEMBL	A0A1U8B8D8	0.0	A0A1U8B8D8_NELNU; transcription factor TCP2
STRING	XP_010275881.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	4e-66	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]